Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IHN45_RS20545 Genome accession   NZ_CP062250
Coordinates   4264053..4264589 (+) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli strain AML002_par     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4259053..4269589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHN45_RS20525 aphA 4259342..4260055 (+) 714 WP_001226928.1 acid phosphatase AphA -
  IHN45_RS20530 yjbQ 4260166..4260582 (+) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  IHN45_RS20535 yjbR 4260586..4260942 (+) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  IHN45_RS20540 uvrA 4260977..4263799 (-) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  IHN45_RS20545 ssb 4264053..4264589 (+) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  IHN45_RS20550 yjcB 4264688..4264969 (-) 282 WP_001295689.1 YjcB family protein -
  IHN45_RS20555 pdeC 4265399..4266985 (+) 1587 WP_000019548.1 c-di-GMP phosphodiesterase PdeC -
  IHN45_RS20560 soxS 4266988..4267311 (-) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  IHN45_RS20565 soxR 4267397..4267861 (+) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=425312 IHN45_RS20545 WP_000168305.1 4264053..4264589(+) (ssb) [Escherichia coli strain AML002_par]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=425312 IHN45_RS20545 WP_000168305.1 4264053..4264589(+) (ssb) [Escherichia coli strain AML002_par]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489