Detailed information NTG0042504

Bioinformatically predicted

Overview

• Name: ruvB
• Type: Machinery gene
• Locus tag: HPSH112_RS08470
• Genome accession: NC_017741
• Coordinates: 446749..447765 (-)
• Length: 338 a.a.
• NCBI ID: WP_000664453.1
• Uniprot ID: -
• Organism: Helicobacter pylori Shi112
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 441749..452765

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH112_RS02150 (HPSH112_02195)	queA	441899..442936 (-)	1038	WP_000657327.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
HPSH112_RS02155 (HPSH112_02200)	tatC	442937..443734 (-)	798	WP_000461252.1	twin-arginine translocase subunit TatC	-
HPSH112_RS02160 (HPSH112_02205)	tatB	443727..444209 (-)	483	WP_000467596.1	Sec-independent protein translocase protein TatB	-
HPSH112_RS02165 (HPSH112_02210)	-	444477..446591 (-)	2115	WP_000958896.1	DNA cytosine methyltransferase	-
HPSH112_RS08470 (HPSH112_02215)	ruvB	446749..447765 (-)	1017	WP_000664453.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HPSH112_RS08475 (HPSH112_02220)	panB	447766..448578 (-)	813	WP_000062663.1	3-methyl-2-oxobutanoate hydroxymethyltransferase	-
HPSH112_RS02180 (HPSH112_02225)	-	448727..449449 (+)	723	WP_000523345.1	hypothetical protein	-
HPSH112_RS02185 (HPSH112_02230)	-	449439..450293 (+)	855	WP_014662208.1	outer membrane beta-barrel protein	-
HPSH112_RS02190 (HPSH112_02235)	-	450302..451246 (+)	945	WP_000911212.1	outer membrane beta-barrel protein	-
HPSH112_RS02195 (HPSH112_02240)	-	451256..452578 (+)	1323	WP_000423073.1	M23 family metallopeptidase	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 37394.30 Da
• Isoelectric Point: 6.0715

>NTDB_id=42504 HPSH112_RS08470 WP_000664453.1 446749..447765(-) (ruvB) [Helicobacter pylori Shi112]
MKERIVNLETLDFETSQEASLRPNLWEDYIGQEKIKSNLQVSICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
LKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYNPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTTTPTPASLF

Nucleotide

• Length: 1017 bp

>NTDB_id=42504 HPSH112_RS08470 WP_000664453.1 446749..447765(-) (ruvB) [Helicobacter pylori Shi112]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGCGAGTTTGCGCCCTAATCTTTGGGA
AGATTATATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAGTTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
CTCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGTTGG
ATATTATCATAGGCTCAGGCCCGGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAACCCTAGCGAACT
GGCTCTTATTATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATTGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCTACAACCACCCCTACTCCAGCAAGTCTATTTTAG

Domains

Predicted by InterProScan.

• RuvB C-terminal winged helix domain (WHD_RuvB) (256-325)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (21-179)

• RuvB AAA lid domain (AAA_lid_4) (182-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvB	Helicobacter pylori 26695	96.386	98.225	0.947
ruvB	Bacillus subtilis subsp. subtilis str. 168	54.489	95.562	0.521
ruvB	Synechocystis sp. PCC 6803	51.875	94.675	0.491
ruvB	Streptococcus pneumoniae TIGR4	50.774	95.562	0.485
ruvB	Streptococcus pneumoniae R6	50.774	95.562	0.485
ruvB	Streptococcus pneumoniae D39	50.774	95.562	0.485