Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G5C33_RS00860 Genome accession   NZ_CP049109
Coordinates   168358..168909 (-) Length   183 a.a.
NCBI ID   WP_165325482.1    Uniprot ID   A0A6G6Y0L3
Organism   Sphingosinithalassobacter tenebrarum strain zrk23     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 163358..173909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C33_RS00835 (G5C33_00835) - 163723..164847 (+) 1125 WP_165325477.1 homoserine O-acetyltransferase -
  G5C33_RS00840 (G5C33_00840) metW 164844..165434 (+) 591 WP_165325478.1 methionine biosynthesis protein MetW -
  G5C33_RS00845 (G5C33_00845) - 165445..166305 (+) 861 WP_165325479.1 pirin family protein -
  G5C33_RS00850 (G5C33_00850) - 166302..167099 (-) 798 WP_165325480.1 DUF1206 domain-containing protein -
  G5C33_RS00855 (G5C33_00855) - 167165..168337 (-) 1173 WP_165325481.1 patatin-like phospholipase family protein -
  G5C33_RS00860 (G5C33_00860) ssb 168358..168909 (-) 552 WP_165325482.1 single-stranded DNA-binding protein Machinery gene
  G5C33_RS00865 (G5C33_00865) - 169000..169176 (+) 177 WP_165325483.1 DUF4169 family protein -
  G5C33_RS00870 (G5C33_00870) - 169173..171029 (-) 1857 WP_165325484.1 ferrous iron transporter B -
  G5C33_RS00875 (G5C33_00875) - 171037..171306 (-) 270 WP_165325485.1 FeoA family protein -
  G5C33_RS00880 (G5C33_00880) - 171382..172044 (-) 663 WP_165325486.1 COQ9 family protein -
  G5C33_RS00885 (G5C33_00885) - 172048..173016 (-) 969 WP_165325487.1 DMT family transporter -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 18872.34 Da        Isoelectric Point: 4.8161

>NTDB_id=424777 G5C33_RS00860 WP_165325482.1 168358..168909(-) (ssb) [Sphingosinithalassobacter tenebrarum strain zrk23]
MAGSVNKVILVGNLGRDPETRTFQNGGKVCNLRIATSESWKDRNTGERREKTEWHSVAIFNEGLANIAERYLRKGSKVYI
EGQLQTRKWQDQSGNDRYSTEVVLQGFNSVLTMLDSPGGGQGGGGGGGRSNDDWGGGGDYAGQSSGGGFGGGGGGGRSGG
GGGGGGFGGGSDFPDDLDDDVPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=424777 G5C33_RS00860 WP_165325482.1 168358..168909(-) (ssb) [Sphingosinithalassobacter tenebrarum strain zrk23]
ATGGCGGGCAGTGTCAACAAGGTTATTCTCGTCGGAAATCTCGGCCGCGATCCCGAGACCCGGACGTTCCAGAACGGCGG
CAAGGTGTGCAATCTGCGCATCGCCACCAGCGAAAGCTGGAAGGACCGCAACACCGGCGAGCGCCGCGAAAAGACCGAAT
GGCATTCGGTGGCGATCTTCAACGAAGGGCTCGCCAACATCGCCGAACGCTATCTGCGCAAGGGCAGCAAGGTCTATATT
GAGGGCCAGCTGCAGACGCGGAAGTGGCAGGACCAGTCGGGCAATGACCGCTATTCGACCGAAGTCGTGCTGCAGGGCTT
CAATTCCGTGCTGACGATGCTCGATTCGCCCGGCGGCGGCCAGGGCGGTGGCGGCGGCGGCGGCCGCAGCAATGACGACT
GGGGCGGCGGCGGCGACTATGCCGGCCAGTCCTCGGGCGGCGGCTTCGGCGGTGGCGGCGGTGGTGGCCGCTCGGGCGGT
GGCGGCGGCGGTGGCGGTTTCGGTGGCGGCAGCGACTTCCCCGACGATCTGGACGACGACGTCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G6Y0L3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.895

100

0.497
  ssb Vibrio cholerae strain A1552

50.276

98.907

0.497
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.377
  ssb Neisseria meningitidis MC58

37.5

100

0.377