Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G5C67_RS05635 Genome accession   NZ_CP049089
Coordinates   1113662..1114204 (-) Length   180 a.a.
NCBI ID   WP_021115958.1    Uniprot ID   A0A836YZ57
Organism   Glaesserella parasuis strain vHPS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1108662..1119204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C67_RS05610 (G5C67_05575) argF 1109007..1110017 (-) 1011 WP_021115969.1 ornithine carbamoyltransferase -
  G5C67_RS05615 (G5C67_05580) - 1110166..1110444 (+) 279 WP_010786777.1 type II toxin-antitoxin system RelE/ParE family toxin -
  G5C67_RS05620 (G5C67_05585) - 1110455..1110727 (+) 273 WP_005712616.1 HigA family addiction module antitoxin -
  G5C67_RS05625 (G5C67_05590) rhlB 1110791..1112011 (+) 1221 WP_021112303.1 ATP-dependent RNA helicase RhlB -
  G5C67_RS05630 (G5C67_05595) - 1112021..1113508 (+) 1488 WP_035524761.1 helicase HerA-like domain-containing protein -
  G5C67_RS05635 (G5C67_05600) ssb 1113662..1114204 (-) 543 WP_021115958.1 single-stranded DNA-binding protein Machinery gene
  G5C67_RS05640 (G5C67_05605) uvrA 1114507..1117335 (+) 2829 WP_164692111.1 excinuclease ABC subunit UvrA -
  G5C67_RS05645 (G5C67_05610) - 1117419..1117799 (+) 381 WP_021109497.1 YacL family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19938.78 Da        Isoelectric Point: 4.9833

>NTDB_id=424648 G5C67_RS05635 WP_021115958.1 1113662..1114204(-) (ssb) [Glaesserella parasuis strain vHPS7]
MAGVNKVIIVGNLGNDPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSSGGDFGGNQGSGWNQAPAQTNYNQGGYSDNYAQNNNFNGGNATRPQPA
QKPAAQAEPPMDNFDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=424648 G5C67_RS05635 WP_021115958.1 1113662..1114204(-) (ssb) [Glaesserella parasuis strain vHPS7]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAATGACCCAGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGCGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAGGTCACCGAATGGC
ACCGTATCGTTTTCTTCCGTCGTCAAGCAGAAGTAGCAGGACAATACTTACGCAAAGGTTCAAAAGTCTATGTAGAAGGC
AAGCTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTACTACAAAT
GTTAGACAGCCGTAGCAGTGGCGGTGATTTTGGCGGAAATCAAGGTAGCGGTTGGAACCAAGCACCAGCGCAAACCAACT
ACAATCAAGGCGGCTACAGCGACAACTATGCTCAAAATAACAACTTCAATGGGGGCAACGCAACCAGACCGCAACCAGCC
CAAAAACCTGCGGCTCAAGCAGAACCACCAATGGATAATTTTGATGATGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836YZ57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

100

100

1
  ssb Vibrio cholerae strain A1552

50.265

100

0.528
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.45
  ssb Neisseria meningitidis MC58

43.956

100

0.444