Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | HPSH169_RS08220 | Genome accession | NC_017740 |
| Coordinates | 424247..425257 (-) | Length | 336 a.a. |
| NCBI ID | WP_000664452.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Shi169 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 419247..430257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH169_RS02030 (HPSH169_02085) | - | 419326..419700 (-) | 375 | WP_000772153.1 | chemotaxis response regulator CheY | - |
| HPSH169_RS02035 (HPSH169_02090) | - | 419992..420594 (+) | 603 | WP_000291636.1 | outer membrane protein | - |
| HPSH169_RS02045 (HPSH169_02095) | - | 420726..421133 (-) | 408 | WP_000906085.1 | hypothetical protein | - |
| HPSH169_RS02050 (HPSH169_02100) | - | 421136..421378 (-) | 243 | WP_000944390.1 | PP0621 family protein | - |
| HPSH169_RS02055 (HPSH169_02105) | rsmG | 421372..421908 (-) | 537 | WP_001068810.1 | 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG | - |
| HPSH169_RS02060 (HPSH169_02110) | queA | 421905..422942 (-) | 1038 | WP_000657328.1 | tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA | - |
| HPSH169_RS02065 (HPSH169_02115) | tatC | 422943..423704 (-) | 762 | WP_000461249.1 | twin-arginine translocase subunit TatC | - |
| HPSH169_RS02070 (HPSH169_02120) | tatB | 423697..424179 (-) | 483 | WP_000467579.1 | Sec-independent protein translocase protein TatB | - |
| HPSH169_RS08220 (HPSH169_02125) | ruvB | 424247..425257 (-) | 1011 | WP_000664452.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| HPSH169_RS08225 (HPSH169_02130) | panB | 425258..426070 (-) | 813 | WP_000062662.1 | 3-methyl-2-oxobutanoate hydroxymethyltransferase | - |
| HPSH169_RS02085 (HPSH169_02135) | - | 426218..426940 (+) | 723 | WP_000523342.1 | hypothetical protein | - |
| HPSH169_RS02090 (HPSH169_02140) | - | 426930..427784 (+) | 855 | WP_014662082.1 | outer membrane beta-barrel protein | - |
| HPSH169_RS02095 (HPSH169_02145) | - | 427793..428737 (+) | 945 | WP_000911212.1 | outer membrane beta-barrel protein | - |
| HPSH169_RS02100 (HPSH169_02150) | - | 428747..430069 (+) | 1323 | WP_000423072.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37291.27 Da Isoelectric Point: 6.0715
>NTDB_id=42463 HPSH169_RS08220 WP_000664452.1 424247..425257(-) (ruvB) [Helicobacter pylori Shi169]
MKERIVNLETLDFETSQEASLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQVKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
MKERIVNLETLDFETSQEASLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQVKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELALIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLNPQTLF
Nucleotide
Download Length: 1011 bp
>NTDB_id=42463 HPSH169_RS08220 WP_000664452.1 424247..425257(-) (ruvB) [Helicobacter pylori Shi169]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGCGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTACAAGTTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGATCAGGTCCGGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCTCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATTGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGCGAGTTTGCGTCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAATTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCGCCCGGTTTGGGTAAAACTTCAATAAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTACAAGTTAAAGACAT
TCTTTTTATTGATGAAATCCACCGGCTTAGCCCAGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTCAGGCTGG
ATATTATCATAGGATCAGGTCCGGCGGCTCAAACCATTAAAATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACC
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGCTTTAGAATGCAATTTTATAGCCCTAGCGAACT
GGCTCTTATCATCAAAAAAGCCGCCGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATTGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGTTAGTCAAAAATTCAAGCTTGATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
GTCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCATCTATGAGAGAAGATGAAGGCACGA
TTGAAGATGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGAATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAACCCCCAAACTTTATTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Helicobacter pylori 26695 |
97.321 |
100 |
0.973 |
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
53.56 |
96.131 |
0.515 |
| ruvB | Streptococcus pneumoniae TIGR4 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae R6 |
50.464 |
96.131 |
0.485 |
| ruvB | Streptococcus pneumoniae D39 |
50.464 |
96.131 |
0.485 |
| ruvB | Synechocystis sp. PCC 6803 |
51.104 |
94.345 |
0.482 |