Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G5C59_RS02405 Genome accession   NZ_CP049088
Coordinates   487620..488138 (+) Length   172 a.a.
NCBI ID   WP_075605585.1    Uniprot ID   -
Organism   Glaesserella parasuis strain sHPS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 482620..493138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G5C59_RS02390 (G5C59_02365) - 483804..484055 (-) 252 WP_021109496.1 LysR family transcriptional regulator -
  G5C59_RS02395 (G5C59_02370) - 484021..484404 (-) 384 WP_005714445.1 YacL family protein -
  G5C59_RS02400 (G5C59_02375) uvrA 484489..487317 (-) 2829 WP_164681593.1 excinuclease ABC subunit UvrA -
  G5C59_RS02405 (G5C59_02380) ssb 487620..488138 (+) 519 WP_075605585.1 single-stranded DNA-binding protein Machinery gene
  G5C59_RS02410 (G5C59_02385) - 488344..489558 (+) 1215 WP_164681594.1 ATP-binding protein -
  G5C59_RS02415 (G5C59_02390) - 489630..489881 (-) 252 Protein_470 helicase HerA-like domain-containing protein -
  G5C59_RS02420 (G5C59_02395) rhlB 489948..491168 (-) 1221 WP_005712618.1 ATP-dependent RNA helicase RhlB -
  G5C59_RS02425 (G5C59_02400) - 491232..491504 (-) 273 WP_005712616.1 HigA family addiction module antitoxin -
  G5C59_RS02430 (G5C59_02405) - 491515..491793 (-) 279 WP_021114871.1 type II toxin-antitoxin system RelE/ParE family toxin -
  G5C59_RS02435 (G5C59_02410) argF 491940..492950 (+) 1011 WP_164681595.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19245.11 Da        Isoelectric Point: 4.8252

>NTDB_id=424618 G5C59_RS02405 WP_075605585.1 487620..488138(+) (ssb) [Glaesserella parasuis strain sHPS7]
MAGVNKVIIVGNLGNAPDMRTMPNGDAVATLSVATSESWNDKMTGERREVTEWHRIVFFRRQAEVAGQYLRKGSKVYVEG
KLKTRKWQDQNGQDRYTTEIQGDVLQMLDSRSGDQGGGWNQTPTDYNQDGYTDSYDQNNNVNGGNATRPRPTPKPAAQAE
PPMDNFDDDIPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=424618 G5C59_RS02405 WP_075605585.1 487620..488138(+) (ssb) [Glaesserella parasuis strain sHPS7]
ATGGCAGGTGTAAATAAAGTAATTATTGTCGGCAATCTCGGTAACGCCCCTGATATGCGTACAATGCCAAACGGCGATGC
GGTTGCAACATTAAGTGTAGCAACCAGTGAAAGTTGGAACGATAAAATGACAGGCGAACGCCGTGAAGTCACTGAATGGC
ACCGTATCGTTTTCTTCCGCCGTCAAGCAGAAGTCGCAGGACAATACTTACGCAAAGGCTCAAAAGTCTATGTAGAAGGC
AAACTCAAAACACGCAAATGGCAAGATCAAAACGGTCAAGATCGTTACACCACAGAAATTCAAGGCGATGTGCTACAAAT
GTTAGACAGTCGTAGCGGTGATCAAGGTGGTGGCTGGAACCAAACACCAACCGACTACAATCAAGACGGCTACACCGACA
GCTATGATCAAAATAACAACGTCAACGGAGGCAACGCAACCAGACCTCGACCAACCCCAAAACCTGCGGCTCAAGCAGAA
CCACCGATGGATAATTTTGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

88.333

100

0.924
  ssb Vibrio cholerae strain A1552

51.412

100

0.529
  ssb Neisseria gonorrhoeae MS11

42.938

100

0.442
  ssb Neisseria meningitidis MC58

41.618

100

0.419