Detailed information    

insolico Bioinformatically predicted

Overview

Name   ideA   Type   Regulator
Locus tag   GVI75_RS04485 Genome accession   NZ_CP049021
Coordinates   915643..916326 (-) Length   227 a.a.
NCBI ID   WP_110076551.1    Uniprot ID   -
Organism   Enterobacter hormaechei strain Eho-E3     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 910643..921326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GVI75_RS04470 (GVI75_04495) - 912701..913381 (-) 681 WP_110076287.1 hypothetical protein -
  GVI75_RS04475 (GVI75_04500) - 913387..914466 (-) 1080 WP_197386153.1 hypothetical protein -
  GVI75_RS04480 (GVI75_04505) - 914466..915530 (-) 1065 WP_000852158.1 hypothetical protein -
  GVI75_RS04485 (GVI75_04510) ideA 915643..916326 (-) 684 WP_110076551.1 endonuclease Regulator
  GVI75_RS04490 (GVI75_04515) - 916435..917037 (-) 603 WP_110076552.1 hypothetical protein -
  GVI75_RS04495 (GVI75_04520) - 917403..917729 (+) 327 WP_110076553.1 plasmid-related protein -
  GVI75_RS04500 (GVI75_04525) ssb 917745..918164 (+) 420 WP_012368368.1 single-stranded DNA-binding protein -
  GVI75_RS04505 (GVI75_04530) bet 918244..919062 (+) 819 WP_014703121.1 phage recombination protein Bet -
  GVI75_RS04510 - 919145..919288 (+) 144 WP_000167275.1 hypothetical protein -
  GVI75_RS04515 (GVI75_04535) - 919349..920365 (+) 1017 WP_110076554.1 lambda-exonuclease family protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26482.55 Da        Isoelectric Point: 7.5670

>NTDB_id=424345 GVI75_RS04485 WP_110076551.1 915643..916326(-) (ideA) [Enterobacter hormaechei strain Eho-E3]
MNRTNFLVTFLIALFAIPAFAEHPTSFSQAKRFAREIYQDNQSTFYCGCSYNNDGAIDAASCGYEPRKQPKRGERLEWEH
VVSAWEIGHQRQCWQNGGRRNCEKNDPEFSKMVSDLHNLVPSVGELNGDRSNFRFGMIPNEPRSYGQCDFEVNFKDRRAE
PPANRQGDIARIYFYMRDQYGLRLSRQQTQLFEAWSRMDPVDEWEKIRDLKIRSVQGNSNCHVTQSC

Nucleotide


Download         Length: 684 bp        

>NTDB_id=424345 GVI75_RS04485 WP_110076551.1 915643..916326(-) (ideA) [Enterobacter hormaechei strain Eho-E3]
ATGAATAGAACTAATTTTCTCGTTACCTTCTTAATAGCGTTGTTCGCTATCCCTGCATTTGCAGAACACCCAACATCGTT
CAGCCAGGCAAAACGATTTGCCCGAGAAATTTACCAAGACAACCAGAGTACGTTTTACTGTGGATGTAGCTATAACAATG
ATGGTGCGATTGATGCTGCATCTTGCGGATATGAACCAAGGAAGCAACCGAAACGAGGAGAACGCTTAGAGTGGGAGCAC
GTTGTCTCAGCTTGGGAAATTGGCCATCAACGCCAATGCTGGCAAAATGGTGGTCGTCGGAACTGTGAAAAGAATGATCC
TGAGTTTTCTAAAATGGTTTCAGATCTCCATAACCTCGTACCATCTGTAGGAGAGCTCAATGGGGATAGGTCAAATTTTC
GATTTGGCATGATTCCGAACGAACCAAGATCCTATGGTCAATGTGATTTCGAAGTTAATTTCAAAGACCGTCGAGCAGAA
CCACCAGCTAACCGTCAGGGTGATATTGCTAGAATCTATTTCTACATGCGAGATCAATACGGCCTAAGACTAAGCAGGCA
ACAAACTCAGCTATTTGAAGCTTGGTCAAGAATGGACCCTGTTGACGAATGGGAAAAAATACGTGATTTGAAGATTAGAA
GTGTACAAGGAAACAGTAATTGCCATGTTACACAAAGTTGTTAA

Domains

Predicted by InterproScan.

Endonuclease I (Endonuclease_1)

(41-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ideA Vibrio cholerae O1 str. 2010EL-1786

95.154

100

0.952
  dns Vibrio parahaemolyticus RIMD 2210633

53.712

100

0.542
  dns Aliivibrio fischeri ES114

51.739

100

0.524
  dns Vibrio cholerae strain A1552

52.444

99.119

0.52
  dns Campylobacter jejuni RM1221

38.636

96.916

0.374