Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GVI75_RS02075 | Genome accession | NZ_CP049021 |
| Coordinates | 433301..433849 (+) | Length | 182 a.a. |
| NCBI ID | WP_032676553.1 | Uniprot ID | A0A0J2HGD4 |
| Organism | Enterobacter hormaechei strain Eho-E3 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 421605..455248 | 433301..433849 | within | 0 |
Gene organization within MGE regions
Location: 421605..455248
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GVI75_RS02015 (GVI75_02015) | - | 421605..422519 (+) | 915 | WP_000550614.1 | ParA family protein | - |
| GVI75_RS02020 (GVI75_02020) | dnaB-PI | 422516..423883 (+) | 1368 | WP_032676543.1 | SPI-7-type island replicative DNA helicase | - |
| GVI75_RS02025 (GVI75_02025) | - | 423880..425595 (+) | 1716 | WP_032676545.1 | ParB family protein | - |
| GVI75_RS02030 (GVI75_02030) | - | 425588..425842 (+) | 255 | WP_032676546.1 | TraR/DksA C4-type zinc finger protein | - |
| GVI75_RS02035 (GVI75_02035) | - | 425835..426578 (+) | 744 | WP_032676697.1 | DUF2786 domain-containing protein | - |
| GVI75_RS02040 (GVI75_02040) | - | 426663..427259 (+) | 597 | WP_000077899.1 | DUF2857 domain-containing protein | - |
| GVI75_RS02045 (GVI75_02045) | - | 427259..427489 (+) | 231 | WP_001178480.1 | hypothetical protein | - |
| GVI75_RS02050 (GVI75_02050) | - | 427568..428800 (+) | 1233 | WP_032676549.1 | STY4528 family pathogenicity island replication protein | - |
| GVI75_RS02055 (GVI75_02055) | - | 429142..429864 (+) | 723 | WP_000818555.1 | PFL_4669 family integrating conjugative element protein | - |
| GVI75_RS02060 (GVI75_02060) | - | 429878..431887 (+) | 2010 | WP_032676550.1 | DNA topoisomerase III | - |
| GVI75_RS02065 (GVI75_02065) | - | 432516..433007 (+) | 492 | WP_032676551.1 | STY4534 family ICE replication protein | - |
| GVI75_RS02070 (GVI75_02070) | - | 433080..433283 (+) | 204 | WP_032676552.1 | hypothetical protein | - |
| GVI75_RS02075 (GVI75_02075) | ssb | 433301..433849 (+) | 549 | WP_032676553.1 | single-stranded DNA-binding protein | Machinery gene |
| GVI75_RS02080 (GVI75_02080) | - | 433928..434170 (+) | 243 | WP_001144085.1 | DUF4160 domain-containing protein | - |
| GVI75_RS02085 (GVI75_02085) | - | 434154..434402 (+) | 249 | WP_000155614.1 | DUF2442 domain-containing protein | - |
| GVI75_RS02090 (GVI75_02090) | - | 434711..435589 (-) | 879 | WP_032676556.1 | metal ABC transporter substrate-binding protein | - |
| GVI75_RS02095 (GVI75_02095) | - | 435592..436464 (-) | 873 | WP_032676557.1 | metal ABC transporter permease | - |
| GVI75_RS02100 (GVI75_02100) | - | 436461..437120 (-) | 660 | WP_032676558.1 | ATP-binding cassette domain-containing protein | - |
| GVI75_RS02105 (GVI75_02105) | - | 437515..437760 (+) | 246 | WP_032676559.1 | hypothetical protein | - |
| GVI75_RS02110 (GVI75_02110) | - | 438182..439537 (+) | 1356 | WP_046092721.1 | TcpQ domain-containing protein | - |
| GVI75_RS02115 (GVI75_02115) | pilM | 439539..439982 (+) | 444 | WP_032676561.1 | type IV pilus biogenesis protein PilM | - |
| GVI75_RS02120 (GVI75_02120) | - | 440002..441675 (+) | 1674 | WP_032676562.1 | PilN family type IVB pilus formation outer membrane protein | - |
| GVI75_RS02125 (GVI75_02125) | pilO2 | 441679..442959 (+) | 1281 | WP_071886859.1 | type 4b pilus protein PilO2 | - |
| GVI75_RS02130 (GVI75_02130) | pilP | 442946..443443 (+) | 498 | WP_001252747.1 | type IV pilus biogenesis protein PilP | - |
| GVI75_RS02135 (GVI75_02135) | - | 443451..445025 (+) | 1575 | WP_032676564.1 | ATPase, T2SS/T4P/T4SS family | - |
| GVI75_RS02140 (GVI75_02140) | - | 445015..446130 (+) | 1116 | WP_032676566.1 | type II secretion system F family protein | - |
| GVI75_RS02145 (GVI75_02145) | - | 446140..446736 (+) | 597 | WP_032676568.1 | type 4 pilus major pilin | - |
| GVI75_RS02150 (GVI75_02150) | - | 446741..447220 (+) | 480 | WP_032676569.1 | lytic transglycosylase domain-containing protein | - |
| GVI75_RS02155 (GVI75_02155) | - | 447217..447885 (+) | 669 | WP_032676571.1 | A24 family peptidase | - |
| GVI75_RS02160 (GVI75_02160) | pilV | 447885..449309 (+) | 1425 | WP_225989962.1 | shufflon system plasmid conjugative transfer pilus tip adhesin PilV | - |
| GVI75_RS02165 (GVI75_02165) | - | 450409..451530 (+) | 1122 | WP_032676573.1 | site-specific integrase | - |
| GVI75_RS02170 (GVI75_02170) | - | 451737..452603 (+) | 867 | WP_032676574.1 | hypothetical protein | - |
| GVI75_RS02175 (GVI75_02175) | - | 452628..453341 (+) | 714 | WP_032676698.1 | TIGR03759 family integrating conjugative element protein | - |
| GVI75_RS02180 (GVI75_02180) | - | 453320..453943 (+) | 624 | WP_032676575.1 | transglycosylase SLT domain-containing protein | - |
| GVI75_RS02185 (GVI75_02185) | - | 453940..454470 (+) | 531 | WP_032676576.1 | integrating conjugative element protein | - |
| GVI75_RS02190 (GVI75_02190) | - | 454467..455015 (+) | 549 | WP_032676577.1 | restriction endonuclease | - |
Sequence
Protein
Download Length: 182 a.a. Molecular weight: 19834.18 Da Isoelectric Point: 6.9793
>NTDB_id=424343 GVI75_RS02075 WP_032676553.1 433301..433849(+) (ssb) [Enterobacter hormaechei strain Eho-E3]
MASRGINKVILVGHLGQDPEVRYMPNSTAVTGFSIATSESWRDKQSGEMKENTEWHRVVLFGKLAEIAGEYLKKGSQVYI
EGHLRTRKWTDNGGVERWTTEVVVGVNGTMQMLGSRNAPAGTGNAQQPGSAQGGWGQPQQPQPQQSAAPHNPANEPPMDF
DDDIPFLGHGYGICRKAIYAIS
MASRGINKVILVGHLGQDPEVRYMPNSTAVTGFSIATSESWRDKQSGEMKENTEWHRVVLFGKLAEIAGEYLKKGSQVYI
EGHLRTRKWTDNGGVERWTTEVVVGVNGTMQMLGSRNAPAGTGNAQQPGSAQGGWGQPQQPQPQQSAAPHNPANEPPMDF
DDDIPFLGHGYGICRKAIYAIS
Nucleotide
Download Length: 549 bp
>NTDB_id=424343 GVI75_RS02075 WP_032676553.1 433301..433849(+) (ssb) [Enterobacter hormaechei strain Eho-E3]
ATGGCAAGTCGCGGAATTAACAAAGTTATTCTCGTTGGCCATCTCGGTCAGGACCCCGAAGTACGTTATATGCCCAATAG
CACAGCTGTTACAGGGTTCAGTATTGCAACGTCGGAGTCATGGCGTGATAAACAAAGCGGTGAAATGAAGGAAAACACTG
AGTGGCATCGCGTTGTGTTGTTTGGCAAACTCGCCGAAATAGCCGGTGAATATCTGAAAAAAGGTTCACAGGTATACATT
GAAGGCCATCTGCGGACCCGCAAATGGACTGATAATGGCGGGGTTGAACGCTGGACAACAGAAGTTGTGGTTGGTGTGAA
CGGTACGATGCAGATGCTGGGTAGTCGTAATGCTCCAGCAGGTACCGGTAATGCTCAGCAGCCTGGGTCGGCGCAAGGAG
GTTGGGGGCAGCCTCAGCAGCCTCAGCCTCAGCAGTCAGCTGCGCCACACAATCCTGCTAATGAACCTCCGATGGATTTT
GATGATGACATACCGTTTCTGGGGCATGGTTATGGGATCTGCCGAAAAGCGATCTACGCCATTTCCTGA
ATGGCAAGTCGCGGAATTAACAAAGTTATTCTCGTTGGCCATCTCGGTCAGGACCCCGAAGTACGTTATATGCCCAATAG
CACAGCTGTTACAGGGTTCAGTATTGCAACGTCGGAGTCATGGCGTGATAAACAAAGCGGTGAAATGAAGGAAAACACTG
AGTGGCATCGCGTTGTGTTGTTTGGCAAACTCGCCGAAATAGCCGGTGAATATCTGAAAAAAGGTTCACAGGTATACATT
GAAGGCCATCTGCGGACCCGCAAATGGACTGATAATGGCGGGGTTGAACGCTGGACAACAGAAGTTGTGGTTGGTGTGAA
CGGTACGATGCAGATGCTGGGTAGTCGTAATGCTCCAGCAGGTACCGGTAATGCTCAGCAGCCTGGGTCGGCGCAAGGAG
GTTGGGGGCAGCCTCAGCAGCCTCAGCCTCAGCAGTCAGCTGCGCCACACAATCCTGCTAATGAACCTCCGATGGATTTT
GATGATGACATACCGTTTCTGGGGCATGGTTATGGGATCTGCCGAAAAGCGATCTACGCCATTTCCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
64.607 |
97.802 |
0.632 |
| ssb | Glaesserella parasuis strain SC1401 |
48.913 |
100 |
0.495 |
| ssb | Neisseria meningitidis MC58 |
47.727 |
96.703 |
0.462 |
| ssb | Neisseria gonorrhoeae MS11 |
46.023 |
96.703 |
0.445 |