Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LIV_RS00215 Genome accession   NC_016011
Coordinates   48051..48593 (+) Length   180 a.a.
NCBI ID   WP_014091617.1    Uniprot ID   -
Organism   Listeria ivanovii subsp. ivanovii PAM 55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 43051..53593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LIV_RS00190 (LIV_0038) aguA 43443..44552 (+) 1110 WP_014091613.1 agmatine deiminase -
  LIV_RS00195 (LIV_0039) - 44570..45349 (+) 780 WP_014091614.1 MurR/RpiR family transcriptional regulator -
  LIV_RS00200 (LIV_0040) - 45451..46110 (+) 660 WP_014091615.1 DedA family protein -
  LIV_RS00205 (LIV_0041) arcA 46189..47418 (+) 1230 WP_095075134.1 arginine deiminase -
  LIV_RS00210 (LIV_0042) rpsF 47701..47994 (+) 294 WP_003718123.1 30S ribosomal protein S6 -
  LIV_RS00215 (LIV_0043) ssbA 48051..48593 (+) 543 WP_014091617.1 single-stranded DNA-binding protein Machinery gene
  LIV_RS00220 (LIV_0044) rpsR 48636..48875 (+) 240 WP_003721669.1 30S ribosomal protein S18 -
  LIV_RS00225 (LIV_0045) - 49031..49639 (+) 609 WP_014091618.1 PepSY domain-containing protein -
  LIV_RS00230 (LIV_0046) - 49893..50507 (+) 615 WP_014091619.1 accessory gene regulator ArgB-like protein -
  LIV_RS00235 (LIV_0047) - 50491..50652 (+) 162 WP_003718129.1 cyclic lactone autoinducer peptide -
  LIV_RS00240 (LIV_0048) - 50748..52043 (+) 1296 WP_014091620.1 sensor histidine kinase -
  LIV_RS00245 (LIV_0049) - 52062..52790 (+) 729 WP_014091621.1 LytR/AlgR family response regulator transcription factor -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19692.35 Da        Isoelectric Point: 4.7306

>NTDB_id=42402 LIV_RS00215 WP_014091617.1 48051..48593(+) (ssbA) [Listeria ivanovii subsp. ivanovii PAM 55]
MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPRNSNGGGGNNYQGGNTNNNSNYNNGGNNFGQAPTNNGGFAQDQQQSQNQNYQSTN
NDPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=42402 LIV_RS00215 WP_014091617.1 48051..48593(+) (ssbA) [Listeria ivanovii subsp. ivanovii PAM 55]
ATGATGAATCGTGTTGTACTCGTAGGACGCTTAACTAAAGATCCTGAATTACGTTATACTCCAGCTGGCGTGGCTGTTGC
GACTTTTACATTAGCTGTAAATCGTACATTCACTAACCAACAAGGAGAACGAGAAGCTGACTTTATTAATTGTGTTGTTT
GGCGTAAACCGGCAGAAAACGTTGCTAATTTCCTGAAGAAGGGAAGCATGGCAGGTGTTGATGGCCGCGTTCAAACTCGT
AATTACGAGGGAAACGATGGTAAACGTGTTTATGTGACAGAAATTGTGGCTGAGAGTGTTCAATTCCTTGAACCGCGTAA
TTCTAATGGCGGTGGCGGAAATAACTATCAAGGTGGCAATACTAATAACAACAGCAATTATAATAATGGTGGAAATAACT
TCGGACAAGCACCTACTAATAACGGTGGATTCGCACAGGACCAGCAACAATCTCAAAATCAAAATTATCAATCCACTAAC
AATGATCCTTTTGCAAGTGATGGTAAGCCAATCGACATTTCTGATGACGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.556

100

0.656
  ssb Latilactobacillus sakei subsp. sakei 23K

55.556

100

0.556
  ssb Glaesserella parasuis strain SC1401

36.022

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

58.889

0.361

Multiple sequence alignment