Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   XACM_RS16090 Genome accession   NC_016010
Coordinates   3788600..3789658 (-) Length   352 a.a.
NCBI ID   WP_011348458.1    Uniprot ID   -
Organism   Xanthomonas euvesicatoria pv. citrumelo F1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3783600..3794658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  XACM_RS16070 (XACM_3269) - 3784702..3786606 (-) 1905 WP_014090959.1 type IV pilus secretin PilQ family protein -
  XACM_RS16075 (XACM_3270) - 3786626..3787159 (-) 534 WP_007974439.1 pilus assembly protein PilP -
  XACM_RS16080 (XACM_3271) - 3787156..3787821 (-) 666 WP_014090960.1 type 4a pilus biogenesis protein PilO -
  XACM_RS16085 (XACM_3272) - 3787818..3788600 (-) 783 WP_008575843.1 PilN domain-containing protein -
  XACM_RS16090 (XACM_3273) comM 3788600..3789658 (-) 1059 WP_011348458.1 pilus assembly protein PilM Machinery gene
  XACM_RS16095 (XACM_3274) - 3789775..3792297 (+) 2523 WP_014090961.1 penicillin-binding protein 1A -
  XACM_RS16100 (XACM_3275) - 3792606..3793256 (+) 651 WP_014090962.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37606.21 Da        Isoelectric Point: 4.3924

>NTDB_id=42397 XACM_RS16090 WP_011348458.1 3788600..3789658(-) (comM) [Xanthomonas euvesicatoria pv. citrumelo F1]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=42397 XACM_RS16090 WP_011348458.1 3788600..3789658(-) (comM) [Xanthomonas euvesicatoria pv. citrumelo F1]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCGACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTGGCAGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAATA
GCCCGGACATGGTGCAGGTGCTGCTCGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGCCTGACCGCCAAGGTAATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCCCTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACTGACGAAGTGATGCGCCGTTACGGGCTGACCTACGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTATGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment