Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   G4P54_RS21025 Genome accession   NZ_CP048852
Coordinates   3995213..3995731 (-) Length   172 a.a.
NCBI ID   WP_014115887.1    Uniprot ID   A0A9Q4E2B6
Organism   Bacillus tequilensis strain EA-CB0015     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3990213..4000731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4P54_RS20995 (G4P54_20930) - 3990727..3992082 (+) 1356 WP_167873777.1 MFS transporter -
  G4P54_RS21000 (G4P54_20935) - 3992116..3992670 (-) 555 WP_167873778.1 sugar O-acetyltransferase -
  G4P54_RS21005 (G4P54_20940) - 3992687..3993067 (-) 381 WP_167873779.1 VOC family protein -
  G4P54_RS21010 (G4P54_20945) - 3993117..3994052 (-) 936 WP_167873780.1 LacI family DNA-binding transcriptional regulator -
  G4P54_RS21015 (G4P54_20950) xth 3994111..3994869 (-) 759 WP_167873781.1 exodeoxyribonuclease III -
  G4P54_RS21020 (G4P54_20955) rpsR 3994930..3995169 (-) 240 WP_024713378.1 30S ribosomal protein S18 -
  G4P54_RS21025 (G4P54_20960) ssbA 3995213..3995731 (-) 519 WP_014115887.1 single-stranded DNA-binding protein SsbA Machinery gene
  G4P54_RS21030 (G4P54_20965) rpsF 3995771..3996058 (-) 288 WP_014115888.1 30S ribosomal protein S6 -
  G4P54_RS21035 (G4P54_20970) ychF 3996169..3997269 (-) 1101 WP_167873782.1 redox-regulated ATPase YchF -
  G4P54_RS21040 (G4P54_20975) - 3997396..3999399 (-) 2004 WP_167873783.1 molybdopterin-dependent oxidoreductase -
  G4P54_RS21045 (G4P54_20980) - 3999450..3999656 (-) 207 WP_024713381.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18714.29 Da        Isoelectric Point: 4.7621

>NTDB_id=423603 G4P54_RS21025 WP_014115887.1 3995213..3995731(-) (ssbA) [Bacillus tequilensis strain EA-CB0015]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQKRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=423603 G4P54_RS21025 WP_014115887.1 3995213..3995731(-) (ssbA) [Bacillus tequilensis strain EA-CB0015]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCTGGAGAACGCGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCCTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACTGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAACGATA
ATCCATTCGGAGGAAATCAAAACAACCAGAAACGCAATCAAGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

99.419

100

0.994
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378