Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   HPB14_RS01900 Genome accession   NC_017733
Coordinates   384662..385672 (-) Length   336 a.a.
NCBI ID   WP_000664498.1    Uniprot ID   -
Organism   Helicobacter pylori HUP-B14     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 379662..390672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPB14_RS01855 (HPB14_01850) - 379787..380161 (-) 375 WP_000772151.1 chemotaxis response regulator CheY -
  HPB14_RS01860 (HPB14_01855) - 380450..381052 (+) 603 WP_000291619.1 outer membrane protein -
  HPB14_RS01870 (HPB14_01860) - 381184..381591 (-) 408 WP_000906090.1 hypothetical protein -
  HPB14_RS01875 (HPB14_01865) - 381594..381824 (-) 231 WP_000944430.1 PP0621 family protein -
  HPB14_RS01880 (HPB14_01870) rsmG 381818..382354 (-) 537 WP_001068891.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  HPB14_RS01885 (HPB14_01875) queA 382351..383388 (-) 1038 WP_000657311.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  HPB14_RS01890 (HPB14_01880) tatC 383389..384123 (-) 735 WP_000461208.1 twin-arginine translocase subunit TatC -
  HPB14_RS01895 (HPB14_01885) tatB 384116..384595 (-) 480 WP_000467574.1 Sec-independent protein translocase protein TatB -
  HPB14_RS01900 (HPB14_01890) ruvB 384662..385672 (-) 1011 WP_000664498.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  HPB14_RS01905 (HPB14_01895) panB 385673..386485 (-) 813 WP_000062697.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HPB14_RS01910 (HPB14_01900) - 386634..387356 (+) 723 WP_000523333.1 hypothetical protein -
  HPB14_RS01915 (HPB14_01905) - 387346..388203 (+) 858 WP_014658431.1 outer membrane beta-barrel protein -
  HPB14_RS01920 (HPB14_01910) - 388212..389156 (+) 945 WP_000911233.1 outer membrane beta-barrel protein -
  HPB14_RS01925 (HPB14_01915) - 389166..390488 (+) 1323 WP_000522709.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37311.30 Da        Isoelectric Point: 6.3684

>NTDB_id=42360 HPB14_RS01900 WP_000664498.1 384662..385672(-) (ruvB) [Helicobacter pylori HUP-B14]
MKERIVNLETLDFETSQEVSLRPNLWEDFIGQEKIKSNLQISICAAKKRQESLDHMLFFGPPGLGKTSISHIIAKEMETN
IKITAAPMIEKSGDLAAILTNLQAKDILFIDEIHRLSPAIEEVLYPAMEDFRLDIIIGSGPAAQTIKIDLPPFTLIGATT
RAGMLSNPLRDRFGMSFRMQFYSPSELSLIIKKAAAKLNQDIKEESADEIAKRSRGTPRIALRLLKRVRDFALVKNSSLM
DLNITLHALNELGVNELGFDEADLAYLSLLANAQGRPVGLNTIAASMREDEGTIEDVIEPFLLANGYLERTAKGRIATPK
THALLKIPTLKSQTLF

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=42360 HPB14_RS01900 WP_000664498.1 384662..385672(-) (ruvB) [Helicobacter pylori HUP-B14]
ATGAAAGAACGGATAGTCAATTTAGAAACTTTGGATTTTGAAACTTCTCAAGAAGTGAGTTTGCGCCCTAATCTTTGGGA
AGATTTTATCGGTCAAGAAAAGATTAAAAGCAACTTGCAAATTTCTATTTGCGCGGCTAAAAAACGCCAAGAAAGTTTGG
ATCACATGCTCTTTTTTGGCCCACCCGGTTTGGGTAAAACTTCAATCAGCCATATCATCGCTAAAGAAATGGAAACCAAT
ATCAAAATCACCGCCGCTCCCATGATAGAAAAAAGCGGTGATTTGGCCGCCATTTTGACGAATTTGCAAGCTAAAGACAT
TCTTTTTATTGATGAAATCCACCGACTTAGCCCGGCGATTGAAGAGGTTTTATACCCGGCTATGGAAGATTTTAGATTGG
ATATTATCATAGGCTCAGGCCCAGCCGCTCAAACCATTAAGATTGATTTACCCCCTTTCACCCTCATCGGCGCTACCACT
AGAGCCGGAATGCTCTCTAACCCCTTAAGAGACAGATTTGGCATGAGTTTTAGGATGCAATTTTATAGCCCTAGCGAACT
TTCTCTCATCATCAAAAAAGCCGCTGCCAAACTCAACCAAGACATCAAAGAAGAAAGCGCTGATGAAATCGCTAAAAGGA
GTAGAGGCACGCCAAGGATCGCTTTAAGGCTTTTAAAAAGGGTGCGCGATTTTGCGCTAGTCAAAAATTCAAGCTTAATG
GATTTAAACATCACTTTGCATGCTTTGAATGAATTAGGCGTGAATGAATTAGGCTTTGATGAAGCGGATTTGGCGTATTT
ATCTTTGTTGGCTAACGCTCAAGGACGACCGGTGGGTTTGAACACGATTGCAGCGTCTATGAGAGAAGATGAAGGTACGA
TTGAAGACGTGATTGAGCCTTTTTTACTCGCTAATGGTTATTTAGAGCGCACCGCTAAAGGCAGGATCGCCACGCCTAAA
ACCCATGCGCTTTTAAAAATCCCCACTTTAAAGTCTCAAACTTTATTTTAA

Domains

Predicted by InterProScan.

RuvB C-terminal winged helix domain (WHD_RuvB)

(256-325)

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(21-179)

RuvB AAA lid domain (AAA_lid_4)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Helicobacter pylori 26695

97.024

100

0.97
  ruvB Bacillus subtilis subsp. subtilis str. 168

53.251

96.131

0.512
  ruvB Streptococcus pneumoniae TIGR4

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae R6

50.464

96.131

0.485
  ruvB Streptococcus pneumoniae D39

50.464

96.131

0.485
  ruvB Synechocystis sp. PCC 6803

52.475

90.179

0.473