Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G4G71_RS29235 Genome accession   NZ_CP048833
Coordinates   6401224..6401721 (-) Length   165 a.a.
NCBI ID   WP_017521888.1    Uniprot ID   A0A5R9RBY4
Organism   Pseudomonas multiresinivorans strain populi     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6396224..6406721
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS29220 (G4G71_29175) - 6398709..6398897 (-) 189 WP_169942311.1 hypothetical protein -
  G4G71_RS29225 (G4G71_29180) - 6399246..6400550 (+) 1305 WP_169942313.1 HEAT repeat domain-containing protein -
  G4G71_RS29230 (G4G71_29185) - 6400586..6401122 (+) 537 WP_169942315.1 M15 family metallopeptidase -
  G4G71_RS29235 (G4G71_29190) ssb 6401224..6401721 (-) 498 WP_017521888.1 single-stranded DNA-binding protein Machinery gene
  G4G71_RS29240 (G4G71_29195) - 6401740..6403128 (-) 1389 WP_169942317.1 MFS transporter -
  G4G71_RS29245 (G4G71_29200) uvrA 6403343..6406177 (+) 2835 WP_169942319.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18349.27 Da        Isoelectric Point: 5.2781

>NTDB_id=423417 G4G71_RS29235 WP_017521888.1 6401224..6401721(-) (ssb) [Pseudomonas multiresinivorans strain populi]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNVTLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIVAEYVRKGSQIYVE
GSLRTRKWQGQDGQDKYTTEIVVDINGNMQLLGGRPGAGGDDAPRAPREPQQRPQQAQRPAPQQQSQPAPQPAPDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=423417 G4G71_RS29235 WP_017521888.1 6401224..6401721(-) (ssb) [Pseudomonas multiresinivorans strain populi]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTCGGTAACGTCGGTGGCGATCCGGAAACCCGTTACATGCCCAACGGCAA
CGCGGTGACCAACGTCACCCTGGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAGCAGGAGCGTACCGAGT
GGCACCGCGTGGTGTTCTTCGGTCGCCTGGCTGAGATCGTCGCCGAGTACGTGCGCAAGGGCTCGCAGATCTACGTCGAA
GGCAGCCTGCGCACTCGCAAATGGCAGGGCCAGGACGGTCAGGACAAGTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGCTGCTGGGCGGCCGTCCGGGCGCCGGTGGTGACGATGCTCCGCGCGCTCCCCGCGAGCCGCAGCAGCGTC
CGCAGCAGGCCCAGCGTCCTGCGCCGCAGCAGCAGTCCCAGCCCGCGCCGCAACCGGCTCCGGACTACGACAGCTTCGAC
GACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5R9RBY4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

56.497

100

0.606
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.558
  ssb Neisseria gonorrhoeae MS11

45.763

100

0.491
  ssb Neisseria meningitidis MC58

45.198

100

0.485