Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   G4G71_RS20930 Genome accession   NZ_CP048833
Coordinates   4616347..4616694 (-) Length   115 a.a.
NCBI ID   WP_169939846.1    Uniprot ID   -
Organism   Pseudomonas multiresinivorans strain populi     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4611347..4621694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G4G71_RS20915 (G4G71_20870) uvrB 4612559..4614574 (-) 2016 WP_169939842.1 excinuclease ABC subunit UvrB -
  G4G71_RS20920 (G4G71_20875) - 4614758..4615954 (+) 1197 WP_169939844.1 amino acid aminotransferase -
  G4G71_RS20930 (G4G71_20885) comEA/comE1 4616347..4616694 (-) 348 WP_169939846.1 ComEA family DNA-binding protein Machinery gene
  G4G71_RS20935 (G4G71_20890) - 4616891..4618879 (-) 1989 WP_169939848.1 polysaccharide biosynthesis protein -
  G4G71_RS20940 (G4G71_20895) - 4618950..4619975 (-) 1026 WP_169939850.1 MraY family glycosyltransferase -
  G4G71_RS20945 (G4G71_20900) - 4619972..4620934 (-) 963 WP_169939852.1 UDP-glucose 4-epimerase family protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 11714.52 Da        Isoelectric Point: 10.2472

>NTDB_id=423407 G4G71_RS20930 WP_169939846.1 4616347..4616694(-) (comEA/comE1) [Pseudomonas multiresinivorans strain populi]
MKKSLLSVASLILLAGLSFGGAALAATNGAPAVKPAAETTASTEKAPVAQVAAVNINTASAEELQHSLKGIGKVKAQAIV
DYRTTNGPFTTVDQLLEVKGIGKGTLDKNRDKISL

Nucleotide


Download         Length: 348 bp        

>NTDB_id=423407 G4G71_RS20930 WP_169939846.1 4616347..4616694(-) (comEA/comE1) [Pseudomonas multiresinivorans strain populi]
ATGAAGAAGAGTCTGCTTTCCGTTGCAAGTCTGATTCTGTTGGCGGGCCTCTCGTTCGGTGGCGCCGCTCTGGCGGCCAC
CAATGGGGCTCCAGCCGTAAAACCCGCAGCCGAAACCACGGCTTCAACCGAAAAGGCACCTGTTGCCCAGGTGGCGGCGG
TGAATATCAACACCGCATCGGCTGAAGAGTTGCAGCATTCCCTGAAAGGTATCGGCAAGGTGAAAGCCCAGGCCATCGTG
GACTACCGCACAACCAACGGGCCGTTCACCACGGTCGATCAATTGCTCGAAGTGAAGGGCATCGGCAAGGGGACGCTGGA
CAAGAATCGCGACAAGATTTCGCTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(53-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

50.407

100

0.539
  comEA Vibrio cholerae C6706

61.039

66.957

0.409
  comEA Vibrio cholerae strain A1552

61.039

66.957

0.409
  comE1/comEA Haemophilus influenzae Rd KW20

56

65.217

0.365

Multiple sequence alignment