Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3257_RS00240 Genome accession   NZ_CP048832
Coordinates   55578..56087 (-) Length   169 a.a.
NCBI ID   WP_034781209.1    Uniprot ID   -
Organism   Janthinobacterium lividum strain EIF1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 50578..61087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3257_RS00215 (G3257_00215) - 50622..51890 (-) 1269 WP_176374355.1 MFS transporter -
  G3257_RS00220 (G3257_00220) - 51865..52623 (-) 759 WP_176374356.1 nucleotidyltransferase domain-containing protein -
  G3257_RS00225 (G3257_00225) - 52620..53705 (-) 1086 WP_176374357.1 DUF455 family protein -
  G3257_RS00230 (G3257_00230) - 53814..55004 (-) 1191 WP_139144537.1 hypothetical protein -
  G3257_RS00235 (G3257_00235) - 55070..55294 (-) 225 WP_131688859.1 hypothetical protein -
  G3257_RS00240 (G3257_00240) ssb 55578..56087 (-) 510 WP_034781209.1 single-stranded DNA-binding protein Machinery gene
  G3257_RS00245 (G3257_00245) uvrA 56469..59318 (+) 2850 WP_070258657.1 excinuclease ABC subunit UvrA -
  G3257_RS00250 (G3257_00250) - 59382..59999 (-) 618 WP_176374358.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18092.27 Da        Isoelectric Point: 5.9466

>NTDB_id=423367 G3257_RS00240 WP_034781209.1 55578..56087(-) (ssb) [Janthinobacterium lividum strain EIF1]
MASVNKVIIVGNLGRDPEIRYMPSGDAIANIAVATSYKSKDRNTGEQKELTEWHRISFFGRLAEIVGQYLKKGSSVYVEG
RLQTRKYTDKDGVEKYATDIIAEQMQMLGGRSGMGGDAGGGDDSYGGGGGYEAPAPRQAPAPRPAPAPAPRPAPKPAPNF
SDMDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=423367 G3257_RS00240 WP_034781209.1 55578..56087(-) (ssb) [Janthinobacterium lividum strain EIF1]
ATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCGCTACATGCCTAGCGGCGACGC
GATCGCCAACATCGCCGTGGCCACTTCGTACAAATCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGC
ACCGTATCTCGTTCTTCGGCCGCCTGGCGGAAATCGTCGGCCAATACCTGAAAAAAGGTTCGTCCGTCTACGTCGAAGGC
CGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAACCGACATCATCGCGGAACAGATGCAAAT
GCTGGGCGGCCGTTCCGGCATGGGCGGCGACGCCGGCGGTGGCGATGACAGCTACGGTGGTGGTGGCGGCTACGAAGCCC
CGGCCCCGCGCCAGGCACCGGCTCCGCGCCCAGCCCCGGCACCGGCGCCACGCCCGGCACCGAAGCCAGCACCGAACTTC
TCGGATATGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria meningitidis MC58

52.273

100

0.544
  ssb Glaesserella parasuis strain SC1401

49.198

100

0.544
  ssb Neisseria gonorrhoeae MS11

51.685

100

0.544
  ssb Vibrio cholerae strain A1552

50.838

100

0.538

Multiple sequence alignment