Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   BAINH2_RS18875 Genome accession   NZ_CP061852
Coordinates   3879879..3880568 (-) Length   229 a.a.
NCBI ID   WP_053573894.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain INH2-4b     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3874879..3885568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BAINH2_RS18855 (BAINH2_18855) - 3875784..3876131 (-) 348 WP_053573896.1 YxeA family protein -
  BAINH2_RS18860 (BAINH2_18860) yxdM 3876145..3878013 (-) 1869 WP_053573895.1 ABC transporter permease YxdM -
  BAINH2_RS18865 (BAINH2_18865) yxdL 3877988..3878761 (-) 774 WP_007614823.1 ABC transporter ATP-binding protein YxdL -
  BAINH2_RS18870 (BAINH2_18870) yxdK 3878905..3879882 (-) 978 WP_015418563.1 two-component system sensor histidine kinase YxdK -
  BAINH2_RS18875 (BAINH2_18875) braR 3879879..3880568 (-) 690 WP_053573894.1 two-component system response regulator YxdJ Regulator
  BAINH2_RS18880 (BAINH2_18880) - 3880718..3882157 (-) 1440 WP_053573893.1 sensor histidine kinase KdpD -
  BAINH2_RS18885 (BAINH2_18885) - 3882154..3882876 (-) 723 WP_012118836.1 response regulator transcription factor -
  BAINH2_RS18890 (BAINH2_18890) - 3883119..3884030 (+) 912 WP_053573892.1 ABC transporter ATP-binding protein -
  BAINH2_RS18895 (BAINH2_18895) - 3884027..3884785 (+) 759 WP_053573891.1 ABC transporter permease -
  BAINH2_RS18900 (BAINH2_18900) - 3884802..3885536 (+) 735 WP_012118839.1 ABC transporter permease -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26487.22 Da        Isoelectric Point: 4.9502

>NTDB_id=423256 BAINH2_RS18875 WP_053573894.1 3879879..3880568(-) (braR) [Bacillus amyloliquefaciens strain INH2-4b]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVAAADFTAVLDVFLREKPDVVLLDINLPSYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGAYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTGRDRLMEKTWDTDIFVDDNTLNVYITRLRKKLRELNAPVSIESVRGEGYQLRALS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=423256 BAINH2_RS18875 WP_053573894.1 3879879..3880568(-) (braR) [Bacillus amyloliquefaciens strain INH2-4b]
ATGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACCGTGGCCGCTGCGGATTTCACGGCTGTTCTTGATGTTTTTTTGCGGGAAAAGCCTGATGTGGTGCTGCTTGATATCA
ATCTGCCGTCTTATGACGGCTATTATTGGTGCCGCCAGATCCGCCAGCACTCCACAAGCCCGATCATTTTTATCTCTGCC
AGAAGCGGGGAAATGGATCAAGTGATGGCGATTGAAAACGGCGGAGATGATTATATCGAAAAACCGTTTTCCTACGATAT
TGTGCTGGCGAAAATCAAAAGCCAGATCCGCAGGGCATACGGAGCGTACGCCGCCAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGTGTGCAGCTCTTTGTGGAACGGTTTGAACTGCGCTTTCAGGACGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTGGAGCGGGGAGAAAAGGTGACGGGAAGAGACCGGCTCATGGAAAAAACGTGGGACACCGA
CATTTTCGTCGATGATAATACGCTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CCATTGAATCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCTGTCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-112)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.359

97.38

0.393

Multiple sequence alignment