Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3M57_RS11535 Genome accession   NZ_CP048815
Coordinates   2487957..2488466 (+) Length   169 a.a.
NCBI ID   WP_056752171.1    Uniprot ID   -
Organism   Caulobacter rhizosphaerae strain KCTC 52515     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2482957..2493466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3M57_RS11515 - 2483168..2483722 (+) 555 WP_056752162.1 GNAT family protein -
  G3M57_RS11520 - 2483804..2486647 (+) 2844 WP_163230599.1 hypothetical protein -
  G3M57_RS11525 - 2486736..2487407 (+) 672 WP_056752164.1 hypothetical protein -
  G3M57_RS11530 - 2487423..2487812 (+) 390 WP_056752168.1 hypothetical protein -
  G3M57_RS11535 ssb 2487957..2488466 (+) 510 WP_056752171.1 single-stranded DNA-binding protein Machinery gene
  G3M57_RS11540 - 2488834..2489106 (-) 273 WP_156402107.1 hypothetical protein -
  G3M57_RS11545 - 2489726..2490430 (+) 705 WP_163230601.1 heme-binding beta-barrel domain-containing protein -
  G3M57_RS11550 - 2490525..2491289 (+) 765 WP_156402108.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 17946.79 Da        Isoelectric Point: 5.3415

>NTDB_id=423256 G3M57_RS11535 WP_056752171.1 2487957..2488466(+) (ssb) [Caulobacter rhizosphaerae strain KCTC 52515]
MAGSVNKVILVGNLGADPEIRTLSSGDRVANLRLATSETWRDRTSGERKEKTEWHRVVIFNDNLVKVAESYLRKGSTVYI
EGAIQTRKWADASGVEKYSTEIVLQKFRGELTMLGGRGDNAGASSGGGYDEGYAGGGGGGGNFGGGAPRSQPSGPRESFS
ADLDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=423256 G3M57_RS11535 WP_056752171.1 2487957..2488466(+) (ssb) [Caulobacter rhizosphaerae strain KCTC 52515]
ATGGCGGGCAGCGTCAACAAGGTCATTCTGGTCGGCAACCTCGGCGCCGATCCCGAGATCCGCACCCTCAGCTCGGGCGA
CCGCGTCGCCAACCTGCGCCTGGCCACGTCGGAAACCTGGCGCGACCGCACCTCGGGCGAGCGCAAGGAAAAGACCGAGT
GGCACCGCGTGGTGATCTTCAACGACAACCTGGTGAAGGTGGCCGAAAGTTATCTGCGCAAGGGCTCGACCGTCTATATC
GAGGGCGCCATCCAGACCCGCAAATGGGCCGACGCCTCGGGTGTCGAGAAGTATTCGACCGAGATCGTGCTGCAGAAGTT
CCGCGGCGAACTGACCATGTTGGGCGGCCGCGGCGACAACGCCGGCGCTTCGTCGGGCGGCGGCTATGACGAAGGCTACG
CCGGCGGCGGTGGCGGCGGCGGCAACTTCGGCGGCGGCGCGCCGCGCAGCCAGCCCAGCGGCCCGCGCGAGAGCTTCTCA
GCCGACCTGGACGACGAAATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.286

100

0.521
  ssb Glaesserella parasuis strain SC1401

44.92

100

0.497
  ssb Neisseria gonorrhoeae MS11

41.53

100

0.45
  ssb Neisseria meningitidis MC58

40.984

100

0.444

Multiple sequence alignment