Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | SLG_RS18240 | Genome accession | NC_015976 |
| Coordinates | 3969868..3970410 (-) | Length | 180 a.a. |
| NCBI ID | WP_014077997.1 | Uniprot ID | G2IQI4 |
| Organism | Sphingobium sp. SYK-6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3964868..3975410
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SLG_RS18225 (SLG_36800) | - | 3965513..3966454 (+) | 942 | WP_014077994.1 | DUF979 family protein | - |
| SLG_RS18230 (SLG_36810) | - | 3966451..3967443 (+) | 993 | WP_014077995.1 | DUF2891 domain-containing protein | - |
| SLG_RS18235 (SLG_36820) | - | 3967544..3969859 (+) | 2316 | WP_014077996.1 | S8 family peptidase | - |
| SLG_RS18240 (SLG_36830) | ssb | 3969868..3970410 (-) | 543 | WP_014077997.1 | single-stranded DNA-binding protein | Machinery gene |
| SLG_RS18245 (SLG_36840) | - | 3970618..3972483 (-) | 1866 | WP_014077998.1 | ferrous iron transporter B | - |
| SLG_RS18250 (SLG_36850) | - | 3972483..3972764 (-) | 282 | WP_014077999.1 | FeoA family protein | - |
| SLG_RS18255 (SLG_36860) | - | 3972876..3973559 (-) | 684 | WP_014078000.1 | COQ9 family protein | - |
| SLG_RS18260 (SLG_36870) | ribH | 3973656..3974078 (-) | 423 | WP_014078001.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| SLG_RS18265 (SLG_36880) | - | 3974110..3974961 (-) | 852 | WP_014078002.1 | DMT family transporter | - |
Sequence
Protein
Download Length: 180 a.a. Molecular weight: 18651.42 Da Isoelectric Point: 5.3175
>NTDB_id=42315 SLG_RS18240 WP_014077997.1 3969868..3970410(-) (ssb) [Sphingobium sp. SYK-6]
MAGSVNKVILVGNLGADPEVKSFSNGGRICNIRIATSDNWTDRQSGERRERTEWHNVVIRSDGLIGIAEKYLRKGKKVYI
EGSLQTRKWQDQNGQDRYTTEIVLSGPGAVMTMLDGGPGGGSGEGGGGGGGRRNEGWGAGGDDMGGGFGGGAGARSSGGA
RPASGASPFNDGFDDDEIPF
MAGSVNKVILVGNLGADPEVKSFSNGGRICNIRIATSDNWTDRQSGERRERTEWHNVVIRSDGLIGIAEKYLRKGKKVYI
EGSLQTRKWQDQNGQDRYTTEIVLSGPGAVMTMLDGGPGGGSGEGGGGGGGRRNEGWGAGGDDMGGGFGGGAGARSSGGA
RPASGASPFNDGFDDDEIPF
Nucleotide
Download Length: 543 bp
>NTDB_id=42315 SLG_RS18240 WP_014077997.1 3969868..3970410(-) (ssb) [Sphingobium sp. SYK-6]
ATGGCAGGCAGCGTCAACAAGGTCATTCTCGTCGGAAATCTCGGCGCCGATCCGGAAGTGAAGAGCTTCTCCAACGGCGG
GCGCATCTGCAACATCCGCATTGCCACGTCGGACAACTGGACCGATCGCCAGAGCGGCGAGCGGCGCGAGCGCACCGAGT
GGCACAATGTCGTGATCCGGTCTGACGGCCTCATCGGCATCGCCGAGAAGTATCTGCGCAAGGGCAAGAAGGTCTATATC
GAAGGCTCGCTGCAGACCCGCAAGTGGCAGGACCAGAACGGACAGGATCGCTACACGACCGAGATCGTCCTGTCCGGGCC
CGGCGCGGTCATGACCATGCTGGACGGCGGCCCCGGCGGGGGCAGCGGCGAAGGTGGCGGCGGTGGTGGCGGCCGGCGCA
ACGAAGGCTGGGGCGCTGGCGGCGATGACATGGGCGGCGGTTTCGGCGGCGGCGCGGGCGCGCGTTCGTCCGGCGGGGCC
CGCCCGGCCTCTGGCGCGAGCCCGTTCAACGACGGCTTCGACGACGACGAAATTCCTTTCTGA
ATGGCAGGCAGCGTCAACAAGGTCATTCTCGTCGGAAATCTCGGCGCCGATCCGGAAGTGAAGAGCTTCTCCAACGGCGG
GCGCATCTGCAACATCCGCATTGCCACGTCGGACAACTGGACCGATCGCCAGAGCGGCGAGCGGCGCGAGCGCACCGAGT
GGCACAATGTCGTGATCCGGTCTGACGGCCTCATCGGCATCGCCGAGAAGTATCTGCGCAAGGGCAAGAAGGTCTATATC
GAAGGCTCGCTGCAGACCCGCAAGTGGCAGGACCAGAACGGACAGGATCGCTACACGACCGAGATCGTCCTGTCCGGGCC
CGGCGCGGTCATGACCATGCTGGACGGCGGCCCCGGCGGGGGCAGCGGCGAAGGTGGCGGCGGTGGTGGCGGCCGGCGCA
ACGAAGGCTGGGGCGCTGGCGGCGATGACATGGGCGGCGGTTTCGGCGGCGGCGCGGGCGCGCGTTCGTCCGGCGGGGCC
CGCCCGGCCTCTGGCGCGAGCCCGTTCAACGACGGCTTCGACGACGACGAAATTCCTTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
48.128 |
100 |
0.5 |
| ssb | Vibrio cholerae strain A1552 |
46.328 |
98.333 |
0.456 |
| ssb | Neisseria meningitidis MC58 |
38.71 |
100 |
0.4 |
| ssb | Neisseria gonorrhoeae MS11 |
38.71 |
100 |
0.4 |