Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | G3256_RS09495 | Genome accession | NZ_CP048788 |
| Coordinates | 1983633..1984142 (+) | Length | 169 a.a. |
| NCBI ID | WP_169640591.1 | Uniprot ID | A0A858SWY0 |
| Organism | Roseobacter ponti strain DSM 106830 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1978633..1989142
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3256_RS09475 (G3256_09450) | - | 1978770..1979987 (+) | 1218 | WP_169640587.1 | ABC transporter permease | - |
| G3256_RS09480 (G3256_09455) | - | 1980091..1982181 (+) | 2091 | WP_169640588.1 | ABC transporter ATP-binding protein | - |
| G3256_RS09485 (G3256_09460) | - | 1982255..1982671 (-) | 417 | WP_169640589.1 | hypothetical protein | - |
| G3256_RS09490 (G3256_09465) | - | 1982828..1983409 (-) | 582 | WP_169640590.1 | lytic transglycosylase domain-containing protein | - |
| G3256_RS09495 (G3256_09470) | ssb | 1983633..1984142 (+) | 510 | WP_169640591.1 | single-stranded DNA-binding protein | Machinery gene |
| G3256_RS09500 (G3256_09475) | - | 1984142..1984576 (+) | 435 | WP_169640592.1 | GNAT family N-acetyltransferase | - |
| G3256_RS09505 (G3256_09480) | aroB | 1984582..1985688 (-) | 1107 | WP_169640593.1 | 3-dehydroquinate synthase | - |
| G3256_RS09510 (G3256_09485) | - | 1985681..1986274 (-) | 594 | WP_169640594.1 | shikimate kinase | - |
| G3256_RS09515 | - | 1986357..1986506 (+) | 150 | WP_169640595.1 | hypothetical protein | - |
| G3256_RS09520 (G3256_09490) | - | 1986469..1988028 (+) | 1560 | WP_246227507.1 | hypothetical protein | - |
| G3256_RS09525 (G3256_09495) | - | 1988028..1988996 (+) | 969 | WP_169640596.1 | site-specific tyrosine recombinase XerD | - |
Sequence
Protein
Download Length: 169 a.a. Molecular weight: 17910.52 Da Isoelectric Point: 5.0262
>NTDB_id=422968 G3256_RS09495 WP_169640591.1 1983633..1984142(+) (ssb) [Roseobacter ponti strain DSM 106830]
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFQEGLVRIAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGYGGTLTMLDGRGEGGGGGFGGGGGGDQGYDDRGGDSYGSGGGSGGGGTSGPAPS
RDLDDEIPF
MAGSVNKVILIGNLGRDPEVRSFQNGGKVCNLRIATSETWKDRNTGERKERTEWHSVAIFQEGLVRIAEQYLRKGSKVYI
EGQLQTRKWQDQSGQDRYSTEVVLQGYGGTLTMLDGRGEGGGGGFGGGGGGDQGYDDRGGDSYGSGGGSGGGGTSGPAPS
RDLDDEIPF
Nucleotide
Download Length: 510 bp
>NTDB_id=422968 G3256_RS09495 WP_169640591.1 1983633..1984142(+) (ssb) [Roseobacter ponti strain DSM 106830]
ATGGCCGGCTCAGTAAACAAAGTTATTCTCATCGGCAATCTGGGGCGTGACCCGGAAGTCCGCAGTTTTCAGAACGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACATCCGAGACATGGAAAGACCGCAACACAGGCGAGCGCAAAGAGCGCACGGAAT
GGCATTCGGTCGCTATTTTCCAGGAAGGTCTCGTGCGGATTGCCGAGCAGTATCTGCGCAAAGGGTCCAAAGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACCGTTATTCCACCGAGGTTGTGTTGCAGGGCTA
TGGCGGCACGCTGACCATGCTTGACGGGCGCGGTGAAGGTGGCGGCGGTGGATTTGGCGGCGGCGGCGGCGGAGATCAGG
GCTATGATGACCGCGGCGGCGACAGCTATGGCAGCGGCGGTGGTAGCGGTGGCGGCGGCACCTCCGGTCCGGCACCTTCG
CGTGATCTGGACGATGAAATCCCGTTCTGA
ATGGCCGGCTCAGTAAACAAAGTTATTCTCATCGGCAATCTGGGGCGTGACCCGGAAGTCCGCAGTTTTCAGAACGGCGG
CAAGGTCTGCAACCTGCGCATCGCCACATCCGAGACATGGAAAGACCGCAACACAGGCGAGCGCAAAGAGCGCACGGAAT
GGCATTCGGTCGCTATTTTCCAGGAAGGTCTCGTGCGGATTGCCGAGCAGTATCTGCGCAAAGGGTCCAAAGTCTATATC
GAAGGCCAGCTGCAGACCCGCAAGTGGCAGGACCAGTCCGGCCAGGACCGTTATTCCACCGAGGTTGTGTTGCAGGGCTA
TGGCGGCACGCTGACCATGCTTGACGGGCGCGGTGAAGGTGGCGGCGGTGGATTTGGCGGCGGCGGCGGCGGAGATCAGG
GCTATGATGACCGCGGCGGCGACAGCTATGGCAGCGGCGGTGGTAGCGGTGGCGGCGGCACCTCCGGTCCGGCACCTTCG
CGTGATCTGGACGATGAAATCCCGTTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
55.491 |
100 |
0.568 |
| ssb | Glaesserella parasuis strain SC1401 |
47.312 |
100 |
0.521 |
| ssb | Neisseria meningitidis MC58 |
43.017 |
100 |
0.456 |
| ssb | Neisseria gonorrhoeae MS11 |
43.017 |
100 |
0.456 |