Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   G3T47_RS07415 Genome accession   NZ_CP048761
Coordinates   1430363..1431775 (-) Length   470 a.a.
NCBI ID   WP_002880444.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS004     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1425363..1436775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T47_RS07390 (G3T47_07390) - 1425687..1426451 (+) 765 WP_002867032.1 TSUP family transporter -
  G3T47_RS07395 (G3T47_07395) ctsF 1426444..1427625 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  G3T47_RS07400 (G3T47_07400) ctsE 1427622..1429181 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  G3T47_RS07405 (G3T47_07405) ctsX 1429171..1429758 (-) 588 WP_002851370.1 membrane protein Machinery gene
  G3T47_RS07410 (G3T47_07410) ctsP 1429762..1430370 (-) 609 WP_167844515.1 ATP-binding protein Machinery gene
  G3T47_RS07415 (G3T47_07415) ctsD 1430363..1431775 (-) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T47_RS07420 (G3T47_07420) ctsR 1431753..1432064 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  G3T47_RS07425 (G3T47_07425) nifJ 1432088..1435648 (-) 3561 WP_052794189.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  G3T47_RS07430 (G3T47_07430) - 1435741..1436382 (-) 642 WP_052782179.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 470 a.a.        Molecular weight: 53011.54 Da        Isoelectric Point: 6.6156

>NTDB_id=422713 G3T47_RS07415 WP_002880444.1 1430363..1431775(-) (ctsD) [Campylobacter jejuni strain ZS004]
MIRLILINILCCHYLYALDCQKRLFDISINEKLSIQESLDELAKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFN
FFIKEHDLSYDFDGKILRISGINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFN
IGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSK
GTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSSVVQVENNQ
TLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITPSIVDSVNAPSLKDLGFKHYE

Nucleotide


Download         Length: 1413 bp        

>NTDB_id=422713 G3T47_RS07415 WP_002880444.1 1430363..1431775(-) (ctsD) [Campylobacter jejuni strain ZS004]
ATGATAAGATTAATATTAATTAACATTCTTTGTTGCCATTATCTTTATGCTTTAGATTGTCAAAAGCGTCTTTTTGATAT
CAGTATTAACGAAAAATTAAGCATACAAGAAAGTCTTGATGAGCTTGCAAAATATTGTTCTTTTAGTATTATTGTTAAAG
ATAAAATTGCCAAAGAAAAATTAGAAACATTGCAAAACTCTGTCAATATTCATCAAATGAGTTTGGATGAAATTTTTAAT
TTTTTTATCAAAGAGCATGATCTTAGCTATGATTTTGATGGTAAAATTTTAAGAATTTCAGGCATTAATACGAAGATTTT
TAAGATAAGTTATATCACTTCTATCAGAGAAGGACAAAGCATAACTAAAGCGTCTGTAGACGCTAAACCAAGGCAAAGTG
AATATAGCGGTAGTTTTGATGACGCAGAAGACAATATGATTAAAAGTATGGAAAAATTTGATTTTTGGCAAAATATAGAA
AAAGAGATTATTGTATTATTAAAAAATTCTCATGAAGATTATGAGGCTAAAACTCCCATTATAAATCCCAATGCAGGTCT
TATTATAGTAACTGGAACAAATTCTCAGTTAAAAAGTGTGAAAAATTATTTGCAAAAACTGGAAAATCGTCTTAAAAAAC
AAGTTATTATCGATGTTAGCATACTTGCTGTGAGTTTAAATGAAAGCCATTCTAGTGGGATTAATTGGCAAAATTTTAAT
ATAGGTTTAAATTCACAAGTAAATAATGAAAATTCTTTTATTCAGTTTCAAAATGGGCAAGGTTTTGTTAAGAATTTGGG
TTTAAGGGCGAATTTAAATTTCGATTCTATTATTAACTTTCTTTCTCAAAATGGAAAAACTAGCGTGCTTTCTAATCCAA
AGCTTATGGCTTTAAATAACCAACAAGCCATTATTTCTGTAGGCGATACTATAAATTATCAAGTTAAAGAAAGTTCTAAA
GGTACTGAAAATGGGACTACTGTTAGTGAAAGTTATAATAATTATTCTATTTTTGTAGGCATTTTACTCAATATCTTGCC
TGAAATTTCTGATGATGGAAAAATAATGCTTAGGATTAATCCAAGCTTAAGTGATTTTAAGTATCCAGAAGATAATAAAC
GACAAAAAGAACCAAGAACTATTGCTCCTGATACCATACAAAAAAAGCTTTCTAGTGTTGTGCAAGTAGAGAATAATCAA
ACTTTAATTTTAGGTGGATTGATTTCTCACGATAAATCTAATGAGAAAAATTCTATCAATTTTCTATCAAAAATTCCAAT
CCTAGGTTCTTTGTTTAAAGGAGAAGTTTTAAATTCTAAAGCAACCGAAATTGTTTTTATTATCACTCCAAGTATAGTAG
ATAGTGTAAATGCTCCAAGTCTTAAAGATCTAGGATTTAAGCATTATGAGTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(281-454)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

99.362

100

0.994

Multiple sequence alignment