Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   G3T47_RS07420 Genome accession   NZ_CP048761
Coordinates   1431753..1432064 (-) Length   103 a.a.
NCBI ID   WP_002880445.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS004     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1426753..1437064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T47_RS07400 (G3T47_07400) ctsE 1427622..1429181 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  G3T47_RS07405 (G3T47_07405) ctsX 1429171..1429758 (-) 588 WP_002851370.1 membrane protein Machinery gene
  G3T47_RS07410 (G3T47_07410) ctsP 1429762..1430370 (-) 609 WP_167844515.1 ATP-binding protein Machinery gene
  G3T47_RS07415 (G3T47_07415) ctsD 1430363..1431775 (-) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T47_RS07420 (G3T47_07420) ctsR 1431753..1432064 (-) 312 WP_002880445.1 hypothetical protein Machinery gene
  G3T47_RS07425 (G3T47_07425) nifJ 1432088..1435648 (-) 3561 WP_052794189.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  G3T47_RS07430 (G3T47_07430) - 1435741..1436382 (-) 642 WP_052782179.1 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12450.33 Da        Isoelectric Point: 5.7333

>NTDB_id=422714 G3T47_RS07420 WP_002880445.1 1431753..1432064(-) (ctsR) [Campylobacter jejuni strain ZS004]
MCFSTLFAQDNFEEYFKLIDKENRIDFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIHEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=422714 G3T47_RS07420 WP_002880445.1 1431753..1432064(-) (ctsR) [Campylobacter jejuni strain ZS004]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGCATAGATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATACATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

98.058

100

0.981

Multiple sequence alignment