Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   G3T47_RS07400 Genome accession   NZ_CP048761
Coordinates   1427622..1429181 (-) Length   519 a.a.
NCBI ID   WP_044260336.1    Uniprot ID   -
Organism   Campylobacter jejuni strain ZS004     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1422622..1434181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3T47_RS07375 (G3T47_07375) - 1422632..1423066 (+) 435 WP_002826016.1 flagellar protein FlgN -
  G3T47_RS07380 (G3T47_07380) flgK 1423076..1424902 (+) 1827 WP_002867029.1 flagellar hook-associated protein FlgK -
  G3T47_RS07385 (G3T47_07385) - 1424919..1425683 (+) 765 WP_002877433.1 TIGR02757 family protein -
  G3T47_RS07390 (G3T47_07390) - 1425687..1426451 (+) 765 WP_002867032.1 TSUP family transporter -
  G3T47_RS07395 (G3T47_07395) ctsF 1426444..1427625 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  G3T47_RS07400 (G3T47_07400) ctsE 1427622..1429181 (-) 1560 WP_044260336.1 GspE/PulE family protein Machinery gene
  G3T47_RS07405 (G3T47_07405) ctsX 1429171..1429758 (-) 588 WP_002851370.1 membrane protein Machinery gene
  G3T47_RS07410 (G3T47_07410) ctsP 1429762..1430370 (-) 609 WP_167844515.1 ATP-binding protein Machinery gene
  G3T47_RS07415 (G3T47_07415) ctsD 1430363..1431775 (-) 1413 WP_002880444.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  G3T47_RS07420 (G3T47_07420) ctsR 1431753..1432064 (-) 312 WP_002880445.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60093.83 Da        Isoelectric Point: 5.6702

>NTDB_id=422710 G3T47_RS07400 WP_044260336.1 1427622..1429181(-) (ctsE) [Campylobacter jejuni strain ZS004]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLHKLNLGDKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLACAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=422710 G3T47_RS07400 WP_044260336.1 1427622..1429181(-) (ctsE) [Campylobacter jejuni strain ZS004]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAACAAATTAGCAAATTTTTGTAATTTACATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAAACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCACAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAAGCAAGGAATGATGATGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACGCAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGCATAAACTAAATCT
TGGAGATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAATTGAAAAGTATTGAAAAAAAGATTATCTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTTAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTAGCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.422

100

0.994

Multiple sequence alignment