Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GYK50_RS03005 Genome accession   NZ_CP048752
Coordinates   687603..688217 (+) Length   204 a.a.
NCBI ID   WP_212564245.1    Uniprot ID   -
Organism   Psychrobacter pacificensis strain WSY-P01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 682603..693217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYK50_RS03000 (GYK50_03005) - 686152..687516 (+) 1365 WP_212564244.1 MFS transporter -
  GYK50_RS03005 (GYK50_03010) ssb 687603..688217 (+) 615 WP_212564245.1 single-stranded DNA-binding protein Machinery gene
  GYK50_RS03010 (GYK50_03015) - 689031..689705 (+) 675 WP_212564246.1 hypothetical protein -
  GYK50_RS03015 (GYK50_03020) - 689781..690299 (+) 519 WP_212564247.1 BLUF domain-containing protein -
  GYK50_RS03020 (GYK50_03025) - 690357..690794 (+) 438 WP_093070607.1 BLUF domain-containing protein -
  GYK50_RS03025 (GYK50_03030) - 691249..691572 (+) 324 WP_186473828.1 H-NS histone family protein -
  GYK50_RS03030 (GYK50_03035) gspN 691815..692651 (+) 837 WP_212564248.1 type II secretion system protein N -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22219.94 Da        Isoelectric Point: 5.9191

>NTDB_id=422626 GYK50_RS03005 WP_212564245.1 687603..688217(+) (ssb) [Psychrobacter pacificensis strain WSY-P01]
MRGVNKVIIIGNLGADPEARQFNNGGSVTNISVATSEQWTDKQSGEKREATEWHRISLFNRLGEIAAQYLRKGSKVYIEG
SLRTRKYQDQNGQDRYITEIRAEQMQMLDGMSGGQSDNGGFSNNQGGQNSNSYGNRGGQSNQNNFGQQAGSQPAQQGGYN
NQPSGGQNSFNNQNAPAPQNQFNQPAQSKPTAMPDGPVDDDIPF

Nucleotide


Download         Length: 615 bp        

>NTDB_id=422626 GYK50_RS03005 WP_212564245.1 687603..688217(+) (ssb) [Psychrobacter pacificensis strain WSY-P01]
ATGCGCGGAGTTAATAAAGTTATCATCATCGGTAACCTTGGAGCAGATCCTGAGGCACGCCAGTTCAATAATGGCGGTAG
CGTGACTAATATCTCGGTTGCGACATCTGAGCAGTGGACGGATAAACAAAGCGGTGAAAAAAGAGAAGCGACAGAGTGGC
ATCGTATCTCACTGTTTAACCGTTTAGGCGAAATTGCCGCGCAGTATCTGCGTAAAGGCAGCAAGGTCTATATCGAAGGT
AGCTTGCGTACGCGTAAGTACCAAGACCAGAACGGCCAAGACCGTTATATCACTGAGATTCGAGCTGAGCAAATGCAGAT
GCTTGATGGTATGAGTGGTGGCCAAAGCGATAATGGAGGCTTTAGTAACAATCAAGGTGGACAGAACTCAAACAGTTACG
GCAACCGAGGCGGTCAAAGCAACCAAAATAATTTCGGTCAGCAAGCAGGTAGCCAGCCAGCACAGCAAGGCGGCTACAAT
AACCAACCGAGTGGCGGTCAGAACAGCTTTAATAACCAAAATGCACCTGCGCCGCAAAATCAGTTTAATCAACCCGCGCA
ATCTAAGCCTACGGCAATGCCAGATGGCCCTGTAGACGATGATATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.525
  ssb Vibrio cholerae strain A1552

46.078

100

0.461
  ssb Neisseria meningitidis MC58

41.379

99.51

0.412
  ssb Neisseria gonorrhoeae MS11

41.379

99.51

0.412

Multiple sequence alignment