Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   GYK50_RS01880 Genome accession   NZ_CP048752
Coordinates   428247..429302 (+) Length   351 a.a.
NCBI ID   WP_212564147.1    Uniprot ID   -
Organism   Psychrobacter pacificensis strain WSY-P01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 423247..434302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYK50_RS01870 (GYK50_01870) - 424783..425307 (+) 525 WP_212564145.1 hypothetical protein -
  GYK50_RS01875 (GYK50_01875) - 425409..428054 (-) 2646 WP_212564146.1 PBP1A family penicillin-binding protein -
  GYK50_RS01880 (GYK50_01880) comM 428247..429302 (+) 1056 WP_212564147.1 type IV pilus assembly protein PilM Machinery gene
  GYK50_RS01885 (GYK50_01885) - 429302..429952 (+) 651 WP_212564148.1 PilN domain-containing protein -
  GYK50_RS01890 (GYK50_01890) - 429949..430683 (+) 735 WP_071002930.1 type 4a pilus biogenesis protein PilO -
  GYK50_RS01895 (GYK50_01895) - 430683..431216 (+) 534 WP_058025948.1 pilus assembly protein PilP -
  GYK50_RS01900 (GYK50_01900) - 431244..433613 (+) 2370 WP_212564149.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 38318.65 Da        Isoelectric Point: 4.3824

>NTDB_id=422623 GYK50_RS01880 WP_212564147.1 428247..429302(+) (comM) [Psychrobacter pacificensis strain WSY-P01]
MRLFTSKSRHLIGVDICATSVKIVDIQRQQGMFHLKSYGIERLPEGVVVDKLLVDTEAVGNIIASLARRCQVAGSNAATA
VSGSAVITKIIDMDMMLSDVEREAQIRLDADQYIPYPLEDVNLDFEVLGPSLVSEDMVQVLLAASRSENVDQRVDALTFG
GMQTKVMDIESHAIERAFGLMADNLPNMPELVALVDIGHNQTTLYIAKNGEFIYSREQLFGGVQLTEAIQNRYGLSAEEA
TLSKRERTLPDDYYPEVLTPFIENTIQQITRSLQFYFSSSQYSSIDHVVLAGGSSSIAGLAGMAQQKLGVSVSVANPFTN
MTIAPNIDNEQLTIDAPGLMAACGLALRSFD

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=422623 GYK50_RS01880 WP_212564147.1 428247..429302(+) (comM) [Psychrobacter pacificensis strain WSY-P01]
GTGAGGCTATTTACTTCAAAAAGTCGACATTTGATTGGTGTGGATATTTGTGCCACTTCAGTAAAAATAGTGGACATACA
GCGTCAACAAGGCATGTTCCACCTAAAATCTTACGGTATTGAGAGACTACCAGAAGGTGTAGTCGTCGACAAACTCCTAG
TTGATACAGAGGCGGTTGGCAACATTATAGCGAGTCTAGCAAGACGTTGCCAAGTTGCGGGCAGCAATGCTGCAACGGCC
GTATCAGGATCTGCCGTCATCACCAAAATTATTGATATGGATATGATGCTAAGCGATGTTGAGCGTGAAGCACAGATACG
TCTCGATGCTGATCAATACATACCTTATCCTTTAGAGGATGTGAATTTAGATTTTGAAGTATTAGGCCCCTCTTTGGTTA
GCGAAGATATGGTTCAAGTCCTGCTTGCGGCCTCTCGCTCAGAAAACGTAGATCAACGTGTGGATGCATTGACTTTTGGC
GGGATGCAAACAAAAGTCATGGATATCGAATCACATGCGATAGAGCGTGCTTTTGGACTGATGGCGGATAATCTGCCCAA
TATGCCTGAACTGGTCGCTTTGGTTGATATCGGCCATAATCAAACCACTTTATATATCGCAAAAAATGGTGAGTTTATTT
ATAGTCGAGAGCAATTGTTTGGTGGTGTTCAGTTAACAGAAGCGATTCAAAACCGGTATGGACTGTCAGCTGAAGAAGCA
ACGCTGAGCAAACGTGAGCGCACATTGCCTGATGACTACTATCCTGAAGTTTTGACCCCGTTTATAGAAAATACCATTCA
GCAAATCACTCGCTCCTTACAGTTTTACTTCTCCTCAAGTCAGTATAGCAGTATTGATCACGTGGTACTTGCGGGTGGTA
GTAGCTCCATTGCAGGTCTTGCTGGGATGGCACAACAAAAACTCGGTGTGAGCGTTAGTGTTGCCAATCCGTTTACCAAT
ATGACCATTGCGCCTAATATTGATAATGAGCAATTGACCATTGACGCGCCAGGATTAATGGCTGCATGCGGTCTTGCGTT
AAGGAGCTTTGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

50.427

100

0.504
  pilM Acinetobacter baumannii D1279779

49.858

100

0.499
  comM Acinetobacter baylyi ADP1

48.305

100

0.487
  pilM Legionella pneumophila strain ERS1305867

41.076

100

0.413

Multiple sequence alignment