Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G0030_RS00845 Genome accession   NZ_CP048681
Coordinates   186248..186814 (+) Length   188 a.a.
NCBI ID   WP_005180729.1    Uniprot ID   -
Organism   Acinetobacter indicus strain Q186-3_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 181248..191814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0030_RS00830 (G0030_00830) tenA 182652..183329 (-) 678 WP_180182303.1 thiaminase II -
  G0030_RS00835 (G0030_00835) - 183597..184679 (+) 1083 WP_180182302.1 DUF475 domain-containing protein -
  G0030_RS00840 (G0030_00840) - 184832..186196 (+) 1365 WP_180182301.1 MFS transporter -
  G0030_RS00845 (G0030_00845) ssb 186248..186814 (+) 567 WP_005180729.1 single-stranded DNA-binding protein Machinery gene
  G0030_RS00850 (G0030_00850) - 186970..188196 (+) 1227 WP_180134382.1 site-specific integrase -
  G0030_RS00855 (G0030_00855) - 188189..189745 (+) 1557 WP_180182300.1 site-specific integrase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20640.39 Da        Isoelectric Point: 6.4819

>NTDB_id=422220 G0030_RS00845 WP_005180729.1 186248..186814(+) (ssb) [Acinetobacter indicus strain Q186-3_T]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQGEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=422220 G0030_RS00845 WP_005180729.1 186248..186814(+) (ssb) [Acinetobacter indicus strain Q186-3_T]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCTATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACTGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAGGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCTGGTGGTGGCTAT
GGCAACCAGGGCGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCGGCAGATTTGGATGATGACTTACC
ATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.546

100

0.532
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment