Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G0028_RS17895 Genome accession   NZ_CP048659
Coordinates   3604014..3604622 (-) Length   202 a.a.
NCBI ID   WP_174493927.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain YH12207_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3599014..3609622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0028_RS17865 (G0028_17840) - 3599092..3599967 (-) 876 WP_130072336.1 pirin family protein -
  G0028_RS17870 (G0028_17845) ycaC 3600260..3600886 (+) 627 WP_130072337.1 isochorismate family cysteine hydrolase YcaC -
  G0028_RS17875 (G0028_17850) - 3601007..3601930 (+) 924 WP_180045545.1 LysR substrate-binding domain-containing protein -
  G0028_RS17880 (G0028_17855) ahpC 3602018..3602581 (-) 564 WP_180045539.1 alkyl hydroperoxide reductase subunit C -
  G0028_RS17885 (G0028_17860) - 3602725..3603348 (-) 624 WP_180045538.1 TetR/AcrR family transcriptional regulator -
  G0028_RS17890 (G0028_17865) - 3603472..3603936 (+) 465 WP_130072340.1 hotdog fold domain-containing protein -
  G0028_RS17895 (G0028_17870) ssb 3604014..3604622 (-) 609 WP_174493927.1 single-stranded DNA-binding protein Machinery gene
  G0028_RS17900 (G0028_17875) - 3604674..3606038 (-) 1365 WP_180045537.1 MFS transporter -
  G0028_RS17905 (G0028_17880) - 3606176..3607258 (-) 1083 WP_130072343.1 DUF475 domain-containing protein -
  G0028_RS17910 (G0028_17885) tenA 3607537..3608211 (+) 675 WP_174493929.1 thiaminase II -
  G0028_RS17915 (G0028_17890) - 3608295..3608579 (-) 285 WP_130072345.1 YciI family protein -
  G0028_RS17920 (G0028_17895) - 3608680..3609021 (-) 342 WP_130072346.1 GlpM family protein -
  G0028_RS17925 (G0028_17900) - 3609219..3609593 (+) 375 Protein_3501 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22083.80 Da        Isoelectric Point: 6.4827

>NTDB_id=422181 G0028_RS17895 WP_174493927.1 3604014..3604622(-) (ssb) [Acinetobacter piscicola strain YH12207_T]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEQGQGFGGDNGGYSQPRFNNNQQGGYGNQGNNNPGGYGNPGNQGG
YGNQGNYGNAGNNVNQGFQSPKPAAAPTPAQAPADLDDDLPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=422181 G0028_RS17895 WP_174493927.1 3604014..3604622(-) (ssb) [Acinetobacter piscicola strain YH12207_T]
ATGCGTGGTGTAAATAAAGTTATATTGGTGGGTACTCTAGGTCGTGATCCTGAGACGAAGACTTTCCCAAATGGTGGTTC
TCTCACCCAGTTTTCAATTGCAACAAGTGAGTCTTGGACAGATAAAAATACGGGCGAAAGAAAAGAACAAACAGAATGGC
ACCGTATCGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATTTACGTAAAGGCTCAAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAATGGACAGACCAAAATGGTCAAGAGCGTTACACGACTGAAATTCGTGGTGAGCAAATGCAAAT
GCTTGACTCAAATCGTCAACAAGGCGAACAAGGTCAAGGTTTTGGTGGTGACAATGGTGGTTATAGCCAGCCACGTTTTA
ACAATAATCAGCAAGGTGGCTACGGTAACCAAGGCAATAACAACCCAGGTGGTTATGGCAATCCGGGCAACCAAGGTGGC
TATGGTAACCAAGGTAACTATGGCAATGCGGGCAATAATGTAAATCAAGGTTTCCAATCACCGAAGCCAGCCGCTGCGCC
AACACCTGCTCAAGCACCAGCAGATTTAGATGATGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.485

100

0.515
  ssb Vibrio cholerae strain A1552

41.951

100

0.426
  ssb Neisseria gonorrhoeae MS11

35.961

100

0.361

Multiple sequence alignment