Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G0027_RS09480 Genome accession   NZ_CP048654
Coordinates   1974634..1975200 (+) Length   188 a.a.
NCBI ID   WP_075175360.1    Uniprot ID   A0A6C0XYQ8
Organism   Acinetobacter indicus strain C15_T     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1975357..2006525 1974634..1975200 flank 157


Gene organization within MGE regions


Location: 1974634..2006525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G0027_RS09480 (G0027_09455) ssb 1974634..1975200 (+) 567 WP_075175360.1 single-stranded DNA-binding protein Machinery gene
  G0027_RS09485 (G0027_09460) - 1975357..1976580 (+) 1224 WP_104988036.1 site-specific integrase -
  G0027_RS09490 (G0027_09465) - 1976577..1977074 (+) 498 Protein_1839 site-specific integrase -
  G0027_RS09495 (G0027_09470) - 1977107..1978753 (-) 1647 WP_001094416.1 IS66-like element ISAba17 family transposase -
  G0027_RS09500 (G0027_09475) tnpB 1978828..1979163 (-) 336 WP_000618090.1 IS66 family insertion sequence element accessory protein TnpB -
  G0027_RS09505 (G0027_09480) tnpA 1979160..1979588 (-) 429 WP_000364662.1 IS66-like element accessory protein TnpA -
  G0027_RS09510 (G0027_09485) - 1979671..1980735 (+) 1065 Protein_1843 site-specific integrase -
  G0027_RS09515 (G0027_09490) - 1980728..1982851 (+) 2124 WP_180192450.1 integrase -
  G0027_RS09520 (G0027_09495) - 1982853..1983272 (+) 420 WP_104988039.1 hypothetical protein -
  G0027_RS09525 (G0027_09500) - 1983349..1983837 (-) 489 WP_168382385.1 hypothetical protein -
  G0027_RS09530 (G0027_09505) - 1983941..1985031 (-) 1091 Protein_1847 IS3 family transposase -
  G0027_RS09535 (G0027_09510) - 1985322..1985732 (+) 411 WP_197704863.1 cation efflux protein, CzcI-like -
  G0027_RS09540 (G0027_09515) - 1985781..1987106 (+) 1326 WP_180192438.1 TolC family protein -
  G0027_RS09545 (G0027_09520) - 1987108..1988337 (+) 1230 WP_016658777.1 efflux RND transporter periplasmic adaptor subunit -
  G0027_RS09550 (G0027_09525) - 1988327..1991467 (+) 3141 WP_180192439.1 efflux RND transporter permease subunit -
  G0027_RS09555 (G0027_09530) - 1991554..1992453 (+) 900 WP_005028603.1 cation diffusion facilitator family transporter -
  G0027_RS09560 (G0027_09535) - 1992637..1993230 (+) 594 WP_104988051.1 recombinase family protein -
  G0027_RS09565 (G0027_09540) - 1993293..1994399 (-) 1107 WP_104988052.1 ImmA/IrrE family metallo-endopeptidase -
  G0027_RS09570 (G0027_09545) - 1994412..1995122 (-) 711 WP_104988053.1 hypothetical protein -
  G0027_RS09575 (G0027_09550) - 1995656..1997119 (+) 1464 WP_160246262.1 hypothetical protein -
  G0027_RS09580 (G0027_09555) - 1997215..1998087 (+) 873 WP_104988056.1 restriction endonuclease -
  G0027_RS09585 (G0027_09560) - 1998277..1998528 (+) 252 WP_104988057.1 DUF4041 domain-containing protein -
  G0027_RS09590 (G0027_09565) - 1999413..2001278 (+) 1866 WP_104988058.1 copper resistance system multicopper oxidase -
  G0027_RS09595 (G0027_09570) - 2001265..2001603 (+) 339 WP_104988059.1 hypothetical protein -
  G0027_RS09600 (G0027_09575) - 2001590..2002534 (+) 945 WP_004668309.1 copper resistance protein B -
  G0027_RS09605 (G0027_09580) - 2002766..2004091 (+) 1326 WP_163169897.1 ISNCY family transposase -
  G0027_RS09610 (G0027_09585) - 2004201..2004446 (+) 246 WP_104988060.1 type II toxin-antitoxin system RelB/DinJ family antitoxin -
  G0027_RS09615 (G0027_09590) - 2004436..2004729 (+) 294 WP_000221358.1 type II toxin-antitoxin system RelE/ParE family toxin -
  G0027_RS09620 (G0027_09595) - 2004858..2005187 (-) 330 WP_004641881.1 four-helix bundle copper-binding protein -
  G0027_RS09625 (G0027_09600) - 2005435..2006525 (+) 1091 Protein_1866 IS3 family transposase -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20670.41 Da        Isoelectric Point: 6.4819

>NTDB_id=422128 G0027_RS09480 WP_075175360.1 1974634..1975200(+) (ssb) [Acinetobacter indicus strain C15_T]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSDAWTDKTTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSGRQQSEQGDNGFSQPRFNNNQGGGYSNNNQGGYAPQAQGGFNNNNAGGGY
GNQGGYQQPKPAPAATPAPADLDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=422128 G0027_RS09480 WP_075175360.1 1974634..1975200(+) (ssb) [Acinetobacter indicus strain C15_T]
ATGCGTGGTGTAAATAAGGTCATTTTAGTTGGTACTTTAGGTCGAGATCCAGAAACAAAAACTTTCCCGAATGGTGGCTC
GCTTACTCAATTTTCCATTGCCACCAGTGATGCGTGGACCGATAAAACCACCGGTGAGCGTAAAGAGCAAACCGAATGGC
ACCGTATTGTGCTGCATAACCGTTTAGGTGAAATCGCGCAGCAATACTTACGCAAAGGTTCAAAAGTCTATATTGAAGGT
TCATTGCGTACCCGTCAGTGGACCGATCAGAATGGTCAGGAACGCTACACCACAGAAATTCGTGGCGAGCAAATGCAGAT
GCTGGACTCTGGTCGTCAGCAAAGTGAGCAGGGCGATAATGGTTTTAGCCAGCCACGTTTTAACAATAACCAGGGCGGTG
GTTATAGCAATAACAACCAGGGTGGCTATGCGCCGCAAGCTCAAGGTGGTTTTAACAACAATAATGCCGGTGGTGGTTAT
GGCAACCAGGGTGGTTATCAGCAACCGAAACCAGCTCCTGCTGCAACGCCTGCACCTGCAGATTTGGATGATGACTTACC
GTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6C0XYQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

52.577

100

0.543
  ssb Vibrio cholerae strain A1552

43.939

100

0.463
  ssb Neisseria meningitidis MC58

38.421

100

0.388
  ssb Neisseria gonorrhoeae MS11

38.421

100

0.388

Multiple sequence alignment