Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   G3A50_RS20735 Genome accession   NZ_CP048630
Coordinates   4450706..4451248 (-) Length   180 a.a.
NCBI ID   WP_163077945.1    Uniprot ID   A0A6P1YTB9
Organism   Ancylobacter pratisalsi strain DSM 102029     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4445706..4456248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  G3A50_RS20715 (G3A50_20715) - 4445773..4446354 (-) 582 WP_163076999.1 TIGR00730 family Rossman fold protein -
  G3A50_RS20720 (G3A50_20720) gyrA 4446408..4449173 (-) 2766 WP_163077000.1 DNA gyrase subunit A -
  G3A50_RS20725 (G3A50_20725) - 4449538..4450164 (+) 627 WP_163077001.1 MarC family protein -
  G3A50_RS20730 (G3A50_20730) - 4450219..4450617 (-) 399 WP_163077002.1 DUF2306 domain-containing protein -
  G3A50_RS20735 (G3A50_20735) ssb 4450706..4451248 (-) 543 WP_163077945.1 single-stranded DNA-binding protein Machinery gene
  G3A50_RS22430 - 4451537..4451704 (+) 168 WP_170308654.1 hypothetical protein -
  G3A50_RS20740 (G3A50_20740) uvrA 4451890..4454796 (+) 2907 WP_163077003.1 excinuclease ABC subunit UvrA -
  G3A50_RS20745 (G3A50_20745) - 4454814..4455821 (-) 1008 WP_246252525.1 COX15/CtaA family protein -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18960.79 Da        Isoelectric Point: 5.9952

>NTDB_id=421992 G3A50_RS20735 WP_163077945.1 4450706..4451248(-) (ssb) [Ancylobacter pratisalsi strain DSM 102029]
MAGSVNKVILVGNLGRDPEVRTFQNGGRVCNMRLATSETWRDKASGERRERTEWHSVVIFNENLVKVAEQYLRKGSKVYI
EGQIETRKATDQAGAERYFTEIVLRPFRGELTLLDGRSGGGSSEGGDDYSAGGGSDFGSSGGYGGGSSGGRSSGGERKPA
AVGGGGKFGGGGDLDDEIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=421992 G3A50_RS20735 WP_163077945.1 4450706..4451248(-) (ssb) [Ancylobacter pratisalsi strain DSM 102029]
ATGGCGGGCAGCGTCAACAAGGTGATCCTGGTCGGCAATCTCGGCCGCGACCCGGAAGTGCGCACGTTCCAGAACGGCGG
ACGCGTGTGCAATATGCGGCTGGCCACCTCCGAAACCTGGCGCGACAAGGCGTCGGGAGAGCGTCGCGAGCGCACGGAGT
GGCACAGCGTCGTCATCTTCAACGAGAACCTCGTGAAGGTGGCCGAGCAGTATCTGCGCAAGGGCTCTAAGGTCTATATC
GAGGGCCAGATCGAGACCCGCAAGGCGACGGACCAGGCCGGTGCGGAACGTTATTTCACCGAGATCGTGCTGCGCCCATT
CCGTGGCGAGCTGACGCTTCTCGACGGCCGTAGCGGCGGCGGCTCCTCGGAAGGGGGCGACGACTACAGCGCGGGCGGGG
GCAGCGACTTCGGCTCGTCCGGCGGTTATGGCGGCGGCAGCTCCGGCGGCCGGTCCTCGGGCGGGGAGCGCAAGCCCGCT
GCCGTGGGCGGCGGCGGTAAGTTTGGCGGCGGTGGCGATCTCGACGATGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1YTB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.078

100

0.483
  ssb Vibrio cholerae strain A1552

46.067

98.889

0.456
  ssb Neisseria gonorrhoeae MS11

41.081

100

0.422
  ssb Neisseria meningitidis MC58

41.081

100

0.422

Multiple sequence alignment