Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GCO85_RS02020 Genome accession   NZ_CP048618
Coordinates   437070..437549 (-) Length   159 a.a.
NCBI ID   WP_011213016.1    Uniprot ID   A0AAV2UTR4
Organism   Legionella pneumophila strain ERS1305867     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 432070..442549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GCO85_RS01980 (GCO85_01985) rplO 432202..432636 (+) 435 WP_010946097.1 50S ribosomal protein L15 -
  GCO85_RS01985 (GCO85_01990) secY 432639..433967 (+) 1329 WP_011945551.1 preprotein translocase subunit SecY -
  GCO85_RS01990 (GCO85_01995) rpmJ 433984..434097 (+) 114 WP_010946099.1 50S ribosomal protein L36 -
  GCO85_RS01995 (GCO85_02000) rpsM 434175..434531 (+) 357 WP_010946100.1 30S ribosomal protein S13 -
  GCO85_RS02000 (GCO85_02005) rpsK 434555..434953 (+) 399 WP_010946101.1 30S ribosomal protein S11 -
  GCO85_RS02005 (GCO85_02010) rpsD 434970..435590 (+) 621 WP_010946102.1 30S ribosomal protein S4 -
  GCO85_RS02010 (GCO85_02015) rpoA 435609..436601 (+) 993 WP_011213014.1 DNA-directed RNA polymerase subunit alpha -
  GCO85_RS02015 (GCO85_02020) rplQ 436620..437003 (+) 384 WP_011213015.1 50S ribosomal protein L17 -
  GCO85_RS02020 (GCO85_02025) ssb 437070..437549 (-) 480 WP_011213016.1 single-stranded DNA-binding protein Machinery gene
  GCO85_RS02025 (GCO85_02030) - 437633..439000 (-) 1368 WP_027226453.1 MFS transporter -
  GCO85_RS02030 (GCO85_02035) fabL 439162..439920 (+) 759 WP_027226452.1 enoyl-[acyl-carrier-protein] reductase FabL -
  GCO85_RS02035 (GCO85_02040) - 439991..440404 (+) 414 WP_010946108.1 acyl carrier protein -
  GCO85_RS02040 (GCO85_02045) - 440404..441300 (+) 897 WP_027226450.1 hydroxymyristoyl-ACP dehydratase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17629.38 Da        Isoelectric Point: 4.6616

>NTDB_id=421859 GCO85_RS02020 WP_011213016.1 437070..437549(-) (ssb) [Legionella pneumophila strain ERS1305867]
MARGINKVILVGNVGADPDVRYLPNGNAVTTLSVATSETWKDKTTGEKQDRTEWHRVVCFNRLGEIAGEYIRKGSKLYVE
GSLRTRKWQDQQGQDRYTTEIVASDIQMLDSKGSSATNYDDMPSFQGSSTPQQASTKNQATPTSTAQDAFDELDDDIPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=421859 GCO85_RS02020 WP_011213016.1 437070..437549(-) (ssb) [Legionella pneumophila strain ERS1305867]
ATGGCAAGAGGAATAAATAAAGTAATACTTGTTGGTAATGTAGGGGCAGATCCTGATGTAAGGTATTTGCCTAACGGAAA
TGCTGTTACTACACTTTCAGTTGCTACCAGTGAAACATGGAAAGATAAAACGACAGGTGAAAAACAAGATAGAACTGAAT
GGCACAGAGTTGTCTGTTTTAATCGTCTGGGTGAAATAGCCGGTGAATACATTCGCAAAGGTTCCAAGCTATATGTCGAA
GGGAGCTTAAGAACAAGAAAATGGCAAGATCAACAGGGTCAAGATAGATATACAACTGAAATTGTTGCGTCTGATATACA
AATGCTCGATAGCAAAGGAAGTAGTGCTACTAATTACGACGACATGCCTTCATTTCAGGGATCCTCTACCCCTCAACAAG
CTTCAACAAAGAATCAAGCAACACCAACATCTACAGCACAAGATGCTTTTGATGAGTTAGATGATGACATACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.273

100

0.579
  ssb Vibrio cholerae strain A1552

49.714

100

0.547
  ssb Neisseria gonorrhoeae MS11

39.655

100

0.434
  ssb Neisseria meningitidis MC58

39.655

100

0.434

Multiple sequence alignment