Detailed information NTG0421656

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: G3M69_RS00425
• Genome accession: NZ_CP048599
• Coordinates: 93154..94143 (-)
• Length: 329 a.a.
• NCBI ID: WP_163562710.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain GCT 97
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 88154..99143

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M69_RS07950	-	88192..88406 (+)	215	Protein_81	anthranilate synthase component I	-
G3M69_RS00405 (G3M69_00405)	-	88437..89369 (-)	933	WP_108284724.1	GDP-L-fucose synthase	-
G3M69_RS00410 (G3M69_00410)	gmd	89362..90507 (-)	1146	WP_163562707.1	GDP-mannose 4,6-dehydratase	-
G3M69_RS00415 (G3M69_00415)	-	90548..91960 (-)	1413	WP_163562708.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
G3M69_RS00420 (G3M69_00420)	comB10	92031..93161 (-)	1131	WP_163562709.1	DNA type IV secretion system protein ComB10	Machinery gene
G3M69_RS00425 (G3M69_00425)	comB9	93154..94143 (-)	990	WP_163562710.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
G3M69_RS00430 (G3M69_00430)	comB8	94143..94886 (-)	744	WP_121066139.1	virB8 family protein	Machinery gene
G3M69_RS00435 (G3M69_00435)	comB7	94883..94996 (-)	114	WP_001217877.1	hypothetical protein	Machinery gene
G3M69_RS00440 (G3M69_00440)	comB6	95012..96067 (-)	1056	WP_163498375.1	P-type conjugative transfer protein TrbL	Machinery gene
G3M69_RS00445 (G3M69_00445)	-	96075..97079 (-)	1005	WP_163563472.1	PDZ domain-containing protein	-
G3M69_RS00450 (G3M69_00450)	-	97079..97381 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
G3M69_RS00455 (G3M69_00455)	panD	97384..97737 (-)	354	WP_000142241.1	aspartate 1-decarboxylase	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37977.73 Da
• Isoelectric Point: 9.4539

>NTDB_id=421656 G3M69_RS00425 WP_163562710.1 93154..94143(-) (comB9) [Helicobacter pylori strain GCT 97]
MRKVLYALMGFLLVFSALKADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDSEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYTNAFIKPQKENQENMAENAPKDAPKNNHKPLKEEKEETKEKEEEAIIIGDNTNAMKIVKKDIQKGYKALKSSQRKWYC
LWACSKKSKLSLMPEEIFNDKQFTYFKFDKRLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCI
RFVKRSKGE

Nucleotide

• Length: 990 bp

>NTDB_id=421656 G3M69_RS00425 WP_163562710.1 93154..94143(-) (comB9) [Helicobacter pylori strain GCT 97]
ATGCGTAAGGTTTTATACGCTCTCATGGGTTTTTTGTTGGTTTTTAGCGCTTTAAAAGCCGATGACTTTTTAGAAGAAGC
GAACGAAACAGCCCCAGCGAATTTAAACCACCCCATGCAAGATTTAAATGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCCAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTGGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAGAG
TAACGATCGCATTTTACTCATCAAGCCTTTACAAATCGGCGTGGATTCCAATATCAGCGTGATTGATAGCGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACCAGCTCCAAACACCCTAATTTACAGGTTTTTATAGAAGATAAAAAC
TATTACACTAACGCTTTTATCAAGCCCCAAAAAGAAAATCAAGAAAATATGGCTGAAAATGCCCCTAAAGATGCCCCAAA
AAATAACCACAAGCCCTTAAAAGAAGAAAAAGAAGAAACTAAAGAAAAAGAAGAAGAGGCGATAATTATTGGCGATAACA
CTAATGCGATGAAAATCGTTAAAAAAGACATCCAAAAAGGTTATAAGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGT
TTATGGGCTTGTTCTAAAAAATCCAAACTCTCCTTAATGCCTGAAGAAATCTTTAACGACAAACAATTCACTTATTTCAA
ATTTGACAAAAGATTAGCGCTCTCTAAATTCCCGGTGATTTATAAGGTCGTTGATGGCTATGATAATCCGGTGAATACAA
GGATTGTGGGCGATTACATTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGTTGGGTAAGGACTATTTGTGTATC
CGTTTTGTCAAAAGGAGCAAAGGTGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-320)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.705	100	0.927