Detailed information
Bioinformatically predicted
Overview
| Name | comB10 | Type | Machinery gene |
| Locus tag | G3M69_RS00420 | Genome accession | NZ_CP048599 |
| Coordinates | 92031..93161 (-) | Length | 376 a.a. |
| NCBI ID | WP_163562709.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain GCT 97 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 87031..98161
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| G3M69_RS08175 | - | 87754..88041 (+) | 288 | WP_341534302.1 | hypothetical protein | - |
| G3M69_RS07950 | - | 88192..88406 (+) | 215 | Protein_81 | anthranilate synthase component I | - |
| G3M69_RS00405 (G3M69_00405) | - | 88437..89369 (-) | 933 | WP_108284724.1 | GDP-L-fucose synthase | - |
| G3M69_RS00410 (G3M69_00410) | gmd | 89362..90507 (-) | 1146 | WP_163562707.1 | GDP-mannose 4,6-dehydratase | - |
| G3M69_RS00415 (G3M69_00415) | - | 90548..91960 (-) | 1413 | WP_163562708.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| G3M69_RS00420 (G3M69_00420) | comB10 | 92031..93161 (-) | 1131 | WP_163562709.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| G3M69_RS00425 (G3M69_00425) | comB9 | 93154..94143 (-) | 990 | WP_163562710.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| G3M69_RS00430 (G3M69_00430) | comB8 | 94143..94886 (-) | 744 | WP_121066139.1 | virB8 family protein | Machinery gene |
| G3M69_RS00435 (G3M69_00435) | comB7 | 94883..94996 (-) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| G3M69_RS00440 (G3M69_00440) | comB6 | 95012..96067 (-) | 1056 | WP_163498375.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| G3M69_RS00445 (G3M69_00445) | - | 96075..97079 (-) | 1005 | WP_163563472.1 | PDZ domain-containing protein | - |
| G3M69_RS00450 (G3M69_00450) | - | 97079..97381 (-) | 303 | WP_000347926.1 | YbaB/EbfC family nucleoid-associated protein | - |
| G3M69_RS00455 (G3M69_00455) | panD | 97384..97737 (-) | 354 | WP_000142241.1 | aspartate 1-decarboxylase | - |
Sequence
Protein
Download Length: 376 a.a. Molecular weight: 41883.29 Da Isoelectric Point: 9.7473
>NTDB_id=421655 G3M69_RS00420 WP_163562709.1 92031..93161(-) (comB10) [Helicobacter pylori strain GCT 97]
MNKWIKGAVVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
TATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
MNKWIKGAVVFVGGFATITTISLVYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLAARITPFKQSPKNYEENLIFPVDNPNGIDGFTNLKEKD
TATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK
Nucleotide
Download Length: 1131 bp
>NTDB_id=421655 G3M69_RS00420 WP_163562709.1 92031..93161(-) (comB10) [Helicobacter pylori strain GCT 97]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACCATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACAT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCTTTTTTGATCACTCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCTAATACCGATATATTTTTTCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACCATTACAACCATTTCTTTAGTCTATCATCA
AAAGCCAAAAGCCCCCTTAAATAACCAACCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACAT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCCACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGATTTTTCTCCAAAACAATTAGATTTACTAGCCGCTCGCATCACCCCTTTCAAACAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATGGTTTCACTAACCTTAAAGAAAAAGAC
ACCGCCACTAATGAAAACAAGCTTTTACGCACCATTACGGCTGACAAAATGATACCCGCTTTTTTGATCACTCCCATTTC
TAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTCGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCTAATACCGATATATTTTTTCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB10 | Helicobacter pylori P1 |
96.277 |
100 |
0.963 |