Detailed information NTG0421659

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: G3M69_RS00440
• Genome accession: NZ_CP048599
• Coordinates: 95012..96067 (-)
• Length: 351 a.a.
• NCBI ID: WP_163498375.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain GCT 97
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 90012..101067

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G3M69_RS00415 (G3M69_00415)	-	90548..91960 (-)	1413	WP_163562708.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
G3M69_RS00420 (G3M69_00420)	comB10	92031..93161 (-)	1131	WP_163562709.1	DNA type IV secretion system protein ComB10	Machinery gene
G3M69_RS00425 (G3M69_00425)	comB9	93154..94143 (-)	990	WP_163562710.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
G3M69_RS00430 (G3M69_00430)	comB8	94143..94886 (-)	744	WP_121066139.1	virB8 family protein	Machinery gene
G3M69_RS00435 (G3M69_00435)	comB7	94883..94996 (-)	114	WP_001217877.1	hypothetical protein	Machinery gene
G3M69_RS00440 (G3M69_00440)	comB6	95012..96067 (-)	1056	WP_163498375.1	P-type conjugative transfer protein TrbL	Machinery gene
G3M69_RS00445 (G3M69_00445)	-	96075..97079 (-)	1005	WP_163563472.1	PDZ domain-containing protein	-
G3M69_RS00450 (G3M69_00450)	-	97079..97381 (-)	303	WP_000347926.1	YbaB/EbfC family nucleoid-associated protein	-
G3M69_RS00455 (G3M69_00455)	panD	97384..97737 (-)	354	WP_000142241.1	aspartate 1-decarboxylase	-
G3M69_RS00460 (G3M69_00460)	-	97727..99955 (-)	2229	WP_163562711.1	ATP-dependent Clp protease ATP-binding subunit	-
G3M69_RS00465 (G3M69_00465)	-	99955..100230 (-)	276	WP_000784925.1	ATP-dependent Clp protease adaptor ClpS	-
G3M69_RS00470 (G3M69_00470)	-	100262..100675 (-)	414	WP_001023005.1	universal stress protein	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39656.55 Da
• Isoelectric Point: 9.0413

>NTDB_id=421659 G3M69_RS00440 WP_163498375.1 95012..96067(-) (comB6) [Helicobacter pylori strain GCT 97]
MKHDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSAVALAFMLFAYRSLKEQNFFSASALLEALWFVGFFALFNY
ALKNPSRFYELFQNAIFIAPNMITQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQALFLSVL
FAIIILVYLEAHVWCSLGALFLAFGFFKTWRSVVVICLKKCFALGFYKPFLLLVGFLNVSVTKALMDASMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSLKETYKLATNLSANLSQNALSSLQYITTSPAPSSVSPSTSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=421659 G3M69_RS00440 WP_163498375.1 95012..96067(-) (comB6) [Helicobacter pylori strain GCT 97]
ATGAAACATGACGCTTATGAAATCATTCTTTCTTGGTTCATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTCCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGCGGTCGCTTTGGCGTTCATGCTTTTTGCTTACAGGAGTT
TGAAAGAACAGAATTTTTTCAGCGCTAGTGCGCTTTTAGAGGCGTTATGGTTTGTGGGGTTTTTTGCGCTGTTTAACTAC
GCTTTGAAAAACCCTTCGCGCTTTTATGAATTGTTTCAAAACGCTATCTTTATTGCGCCTAACATGATCACGCAAAGCCT
TTCTCAAAGCTTGAGTAACTTTTCTAACCACGCACTTTCTTTAGATTTTATTTTTAATCATGGTTTCTATGCCCTTAGTT
TCATCAGCGATTTGAGCCATAACGAAATGTCCGTGTGGCTTTTTTTAAGCATTTTGCAAGCGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTGGAAGCGCATGTGTGGTGCTCTTTAGGGGCGCTGTTTTTAGCGTTTGGGTTTTT
CAAAACCTGGAGGAGCGTTGTGGTTATATGTCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTAG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCCTTAATGGACGCTAGCATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGCGTTTTTATCATCGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CCTCAAAGAAACTTACAAACTCGCCACCAATTTGAGCGCTAACCTCAGCCAAAACGCCCTTAGTTCCTTACAATATATCA
CGACCTCGCCCGCTCCCTCTAGCGTTTCTCCTTCTACAAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTTAAGGTAGAAACCACTCAATTAGATGTAAAAATTCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	94.017	100	0.94