Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   FY143_RS05625 Genome accession   NZ_CP048522
Coordinates   1135534..1136067 (-) Length   177 a.a.
NCBI ID   WP_065687409.1    Uniprot ID   A0AB36EP11
Organism   Agrobacterium tumefaciens strain Sta004     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1130534..1141067
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FY143_RS05610 (FY143_05555) gyrA 1130556..1133348 (-) 2793 WP_025593447.1 DNA gyrase subunit A -
  FY143_RS05615 (FY143_05560) - 1133566..1134195 (+) 630 WP_003515260.1 MarC family protein -
  FY143_RS05620 (FY143_05565) - 1134319..1135467 (+) 1149 WP_111790237.1 HPP family protein -
  FY143_RS05625 (FY143_05570) ssb 1135534..1136067 (-) 534 WP_065687409.1 single-stranded DNA-binding protein Machinery gene
  FY143_RS05630 (FY143_05575) uvrA 1136375..1139296 (+) 2922 WP_003515263.1 excinuclease ABC subunit UvrA -
  FY143_RS05635 (FY143_05580) - 1139352..1140152 (+) 801 WP_111790238.1 DUF72 domain-containing protein -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18853.60 Da        Isoelectric Point: 5.3175

>NTDB_id=421548 FY143_RS05625 WP_065687409.1 1135534..1136067(-) (ssb) [Agrobacterium tumefaciens strain Sta004]
MAGSVNKVILIGNVGADPEIRRTQDGRPIANLRIATSETWRDRNSGERKEKTEWHTVVVFNEGLCKVVEQYVKKGAKLYI
EGQLQTRKWQDQTGNDRYSTEVVLQGFNSTLTMLDGRGEGGGGSRSGGDIGGGDYGSGGGNYGGGYDQQPAARGGASRGG
SQPSGGFSSDMDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=421548 FY143_RS05625 WP_065687409.1 1135534..1136067(-) (ssb) [Agrobacterium tumefaciens strain Sta004]
ATGGCTGGTAGCGTAAACAAGGTAATTCTGATTGGGAACGTTGGCGCCGATCCCGAAATTCGCCGGACGCAGGACGGCCG
TCCGATCGCCAATCTGCGTATCGCCACCTCAGAGACGTGGCGGGACCGCAACAGCGGCGAGCGCAAGGAAAAGACAGAAT
GGCACACGGTCGTCGTTTTCAACGAAGGTCTGTGCAAGGTTGTCGAACAATATGTGAAAAAGGGCGCCAAGCTCTACATT
GAAGGCCAGCTGCAGACGCGCAAGTGGCAGGACCAGACCGGTAACGACCGTTACTCCACCGAAGTGGTACTGCAGGGCTT
CAACTCCACGCTGACGATGCTCGACGGTCGCGGCGAAGGTGGCGGCGGCAGCCGCAGCGGTGGCGACATCGGCGGTGGAG
ATTATGGCAGCGGCGGCGGTAACTACGGTGGCGGTTACGACCAGCAGCCGGCGGCCCGCGGCGGTGCCTCGCGTGGCGGC
AGCCAGCCTTCCGGCGGCTTCTCCAGTGACATGGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

52.299

98.305

0.514
  ssb Glaesserella parasuis strain SC1401

43.523

100

0.475
  ssb Neisseria meningitidis MC58

37.766

100

0.401
  ssb Neisseria gonorrhoeae MS11

37.766

100

0.401

Multiple sequence alignment