Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACIFE_RS01450 Genome accession   NC_015942
Coordinates   315724..316197 (+) Length   157 a.a.
NCBI ID   WP_014027800.1    Uniprot ID   A0A1B9C0B0
Organism   Acidithiobacillus ferrivorans SS3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 310724..321197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIFE_RS01435 (Acife_0297) trxA 311228..312097 (-) 870 WP_014027797.1 thioredoxin -
  ACIFE_RS01440 (Acife_0298) - 312212..312766 (-) 555 WP_014027798.1 hypothetical protein -
  ACIFE_RS01445 (Acife_0299) uvrA 312833..315637 (-) 2805 WP_041648347.1 excinuclease ABC subunit UvrA -
  ACIFE_RS01450 (Acife_0300) ssb 315724..316197 (+) 474 WP_014027800.1 single-stranded DNA-binding protein Machinery gene
  ACIFE_RS01455 (Acife_0301) - 316595..318214 (+) 1620 WP_014027801.1 type I restriction-modification system subunit M -
  ACIFE_RS01460 (Acife_0302) - 318214..319296 (+) 1083 WP_014027802.1 restriction endonuclease subunit S -
  ACIFE_RS15755 (Acife_0303) - 319289..319897 (+) 609 WP_014027803.1 hypothetical protein -
  ACIFE_RS01470 (Acife_0304) - 320027..320635 (+) 609 WP_014027804.1 DUF6088 family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17043.78 Da        Isoelectric Point: 5.0792

>NTDB_id=42122 ACIFE_RS01450 WP_014027800.1 315724..316197(+) (ssb) [Acidithiobacillus ferrivorans SS3]
MAGVNKVILLGHLGRDPEMRYQPSGGAIANFSVATSETFKDKEGNKQERTEWHRVVLFGRTAEIAGEYLRKGSMAYVEGR
LQTRKWTDKEGQERYTTEIVGDRLQLVGARGGGGGGAASFDEEDQSRPSGGSSSAGSSRKSEMPPAPAEDFDDDIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=42122 ACIFE_RS01450 WP_014027800.1 315724..316197(+) (ssb) [Acidithiobacillus ferrivorans SS3]
ATGGCGGGAGTGAATAAGGTCATATTGTTGGGGCATCTGGGACGGGACCCGGAGATGCGCTATCAGCCCAGTGGTGGCGC
CATCGCGAACTTCAGCGTCGCGACTTCTGAGACCTTCAAGGACAAGGAAGGCAACAAGCAGGAGCGCACCGAATGGCATC
GCGTCGTGCTCTTCGGGCGCACCGCAGAAATTGCCGGCGAATACCTGCGCAAGGGCAGCATGGCTTATGTGGAAGGCCGT
CTGCAGACGCGCAAGTGGACCGACAAGGAAGGGCAGGAGCGCTACACCACGGAGATCGTCGGCGATCGTCTGCAACTGGT
GGGTGCACGTGGGGGCGGTGGCGGCGGTGCGGCGAGCTTTGATGAGGAAGATCAGTCCCGGCCGAGTGGCGGCAGCAGCA
GTGCGGGGAGTTCGCGGAAGAGTGAGATGCCGCCCGCGCCGGCGGAGGATTTTGATGATGATATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.253

100

0.548
  ssb Vibrio cholerae strain A1552

49.133

100

0.541
  ssb Neisseria gonorrhoeae MS11

46.243

100

0.51
  ssb Neisseria meningitidis MC58

45.93

100

0.503

Multiple sequence alignment