Detailed information NTG0421166

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GYM54_RS17365
• Genome accession: NZ_CP048411
• Coordinates: 3779609..3780949 (-)
• Length: 446 a.a.
• NCBI ID: WP_181099930.1
• Uniprot ID: -
• Organism: Pseudomonas sp. MTM4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3774609..3785949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GYM54_RS17355 (GYM54_17350)	-	3776497..3778110 (-)	1614	WP_181099929.1	PleD family two-component system response regulator	-
GYM54_RS17360 (GYM54_17355)	-	3778326..3779381 (+)	1056	WP_131649799.1	DUF2333 family protein	-
GYM54_RS17365 (GYM54_17360)	pilR	3779609..3780949 (-)	1341	WP_181099930.1	sigma-54 dependent transcriptional regulator	Regulator
GYM54_RS17370 (GYM54_17365)	pilS	3781049..3782641 (-)	1593	WP_181099931.1	PAS domain-containing sensor histidine kinase	Regulator
GYM54_RS17375 (GYM54_17370)	-	3782631..3782867 (-)	237	WP_181099932.1	PP0621 family protein	-
GYM54_RS17380 (GYM54_17375)	-	3782955..3783962 (-)	1008	WP_181099934.1	outer membrane protein assembly factor BamD	-
GYM54_RS17385 (GYM54_17380)	rluD	3784238..3785212 (+)	975	WP_131649804.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
GYM54_RS17390 (GYM54_17385)	pgeF	3785209..3785946 (+)	738	WP_181099936.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49883.36 Da
• Isoelectric Point: 6.6148

>NTDB_id=421166 GYM54_RS17365 WP_181099930.1 3779609..3780949(-) (pilR) [Pseudomonas sp. MTM4]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGCGLEMVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRAPNPNDLSVDSRLLGASPPMNVLRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGPRHERPFVPVNCGAIPSELMESEFFGHKKGSFTGAVEDKPGLFQAADGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRSVGGAKEVVVDVRILCATHKDLASEVAAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEA
MLRRLARECNDTPARLHPDAVAKLQSYRFPGNVRELENMLERAYTLCEGDEIKLSDLRLADAPGTSENGEANLAQIDNLE
DHLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=421166 GYM54_RS17365 WP_181099930.1 3779609..3780949(-) (pilR) [Pseudomonas sp. MTM4]
ATGACCGCCCGCCAGAAAGCGCTGATCATCGATGACGAACCCGATATCCGGGAACTCCTGGAGATCACCCTCGGGCGCAT
GAAGCTGGACACCCGCAGCGCCCGCAATCTCAAGGAAGCCCGCGAGTGCCTGGCGCGCGAGCATTACGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCTGCGGACTGGAGATGGTGCAGTTCATCCAGCAACAGTATCCACAACTTCCTGTGGCG
ATGATTACCGCCTACGGCAGCCTCGATACGGCCATCGGAGCGCTCAAAGCCGGTGCTTTCGACTTTCTCACCAAACCGGT
CGATCTTGGCCGGCTACGGGAACTGGTCAACACGGCGCTGCGGCTGCGTGCGCCGAACCCCAATGATCTGAGCGTCGATA
GCCGTCTGCTCGGCGCCTCGCCACCGATGAACGTGTTACGCAAACAGATCGGCAAACTGGCACGCAGTCAGGCGCCGGTC
TACATCAGCGGTGAGTCCGGCAGTGGCAAGGAGTTGGTGGCGCGGCTGATCCATGAGCAAGGTCCACGTCACGAGCGCCC
GTTCGTTCCGGTCAACTGTGGCGCGATTCCATCGGAGCTGATGGAGAGCGAATTTTTCGGCCATAAGAAGGGCAGTTTCA
CGGGCGCGGTGGAAGACAAACCGGGCCTGTTCCAGGCAGCCGATGGCGGGACCTTGTTTCTTGACGAAGTGGCGGACCTG
CCCCTTCCGATGCAAGTGAAACTGCTGCGCGCGATTCAGGAAAAAGCCGTCCGCTCGGTCGGCGGCGCGAAAGAGGTGGT
GGTGGACGTACGGATTCTCTGCGCCACCCATAAGGATCTCGCCAGCGAAGTGGCGGCCGGCCGTTTCCGTCAGGACCTTT
ACTATCGGCTCAACGTCATCGAGCTGCGCGTACCCCCGCTGCGGGAGCGCCGCGAAGATATCGCTCAATTGGCCGAAGCC
ATGCTCCGCCGCCTAGCCCGGGAATGCAACGACACGCCGGCGCGACTACATCCCGACGCAGTGGCCAAACTGCAGAGCTA
TCGGTTTCCCGGTAACGTTCGCGAGCTGGAAAATATGCTGGAACGGGCCTACACGCTTTGCGAAGGCGATGAGATCAAGC
TCAGCGATCTGCGCCTGGCAGACGCACCCGGCACGTCGGAAAACGGCGAAGCGAACCTCGCGCAAATCGACAACCTCGAA
GACCACCTCGAGGATGTCGAACGCAAGCTGATCATGCAGGCGCTGGAAGAAACCCGCTGGAACCGCACCGCGGCCGCCCA
ACGGCTGGGGCTGTCGTTCCGCTCGATGCGTTATCGGCTGAAGAAACTCGGGTTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (8-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	83.559	99.552	0.832
pilR	Acinetobacter baumannii strain A118	48.584	100	0.5
luxO	Vibrio cholerae strain A1552	38.876	99.776	0.388