Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GYM54_RS17370 Genome accession   NZ_CP048411
Coordinates   3781049..3782641 (-) Length   530 a.a.
NCBI ID   WP_181099931.1    Uniprot ID   -
Organism   Pseudomonas sp. MTM4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3776049..3787641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM54_RS17355 (GYM54_17350) - 3776497..3778110 (-) 1614 WP_181099929.1 PleD family two-component system response regulator -
  GYM54_RS17360 (GYM54_17355) - 3778326..3779381 (+) 1056 WP_131649799.1 DUF2333 family protein -
  GYM54_RS17365 (GYM54_17360) pilR 3779609..3780949 (-) 1341 WP_181099930.1 sigma-54 dependent transcriptional regulator Regulator
  GYM54_RS17370 (GYM54_17365) pilS 3781049..3782641 (-) 1593 WP_181099931.1 PAS domain-containing sensor histidine kinase Regulator
  GYM54_RS17375 (GYM54_17370) - 3782631..3782867 (-) 237 WP_181099932.1 PP0621 family protein -
  GYM54_RS17380 (GYM54_17375) - 3782955..3783962 (-) 1008 WP_181099934.1 outer membrane protein assembly factor BamD -
  GYM54_RS17385 (GYM54_17380) rluD 3784238..3785212 (+) 975 WP_131649804.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GYM54_RS17390 (GYM54_17385) pgeF 3785209..3785946 (+) 738 WP_181099936.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59015.24 Da        Isoelectric Point: 8.4643

>NTDB_id=421167 GYM54_RS17370 WP_181099931.1 3781049..3782641(-) (pilS) [Pseudomonas sp. MTM4]
MGIERLTFLGHQGQRILRLYHLYRVAIGLVLVLLISSDLHSDLMRMVNPAAFHYGAWVYLILNILITVLLQNPKRELPVL
GLALLDVVLLTALFYFAGGTPSGIGNLLIVAVAISNILLHGRIGFFIAAVAATGLIYLTFYLSLSDPSTGSQYVQAAALG
TLCFAAALLVQGLTRRLQVSETLARQRAEEVANLEALNAQILQRMRTGILVLDQAERVLLANQGALDLLGQQSLAGERLA
PRCPDLIKGLQQWRDNPTLRPRNFKATPNGATLQPSFAILQHGVKQDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEVLDAADLRLTQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWAHRFASEFRENLPPH
QRVHVETRGSSLQTRMDPNQLIQVLTNLVQNGLRYSGQLNDQAQVWLQLFRDESSDLPVLEVLDDGPGVPTDKLQNIFEP
FFTTENKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLT

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=421167 GYM54_RS17370 WP_181099931.1 3781049..3782641(-) (pilS) [Pseudomonas sp. MTM4]
GTGGGAATTGAGCGCCTGACGTTTTTGGGCCACCAAGGCCAGCGAATCCTTCGCCTCTACCATCTCTATCGCGTTGCGAT
CGGCCTCGTGCTGGTGCTGCTCATCAGCAGCGATCTGCATAGCGACCTGATGCGCATGGTCAACCCGGCGGCCTTTCACT
ATGGCGCCTGGGTCTACCTGATTCTTAATATTCTCATCACCGTACTGCTGCAGAACCCGAAGCGAGAGCTGCCGGTGCTG
GGCCTCGCCCTGCTGGACGTCGTACTCCTCACGGCGCTGTTCTATTTTGCCGGCGGCACGCCCAGCGGGATCGGCAACCT
GCTGATCGTCGCGGTCGCCATCTCCAACATACTGCTGCATGGGCGCATCGGTTTTTTCATCGCCGCGGTTGCCGCGACCG
GGCTCATCTACCTGACTTTCTACCTCAGCCTCAGCGATCCCTCCACGGGCAGCCAGTACGTCCAGGCCGCAGCGCTGGGC
ACGCTCTGCTTCGCCGCCGCGCTATTGGTGCAAGGTCTGACGCGGCGGCTGCAGGTCAGCGAAACCCTGGCACGCCAACG
CGCAGAGGAAGTCGCCAACCTCGAAGCGCTGAATGCGCAAATCCTGCAGCGTATGCGCACCGGGATACTCGTGCTCGACC
AAGCGGAACGCGTGCTGCTCGCCAATCAAGGCGCGCTCGACCTGCTTGGCCAACAATCACTGGCTGGAGAGCGGCTGGCG
CCACGCTGCCCCGACCTAATCAAAGGCCTGCAACAATGGCGCGACAACCCGACCCTGCGCCCGCGCAATTTCAAAGCAAC
GCCCAACGGCGCCACGTTACAACCGAGCTTCGCCATCCTGCAGCACGGCGTGAAACAGGACACCCTGGTGTTTCTCGAGG
ACATTTCTCAGATCGCGCAGAAAGCCCAGCAGCTCAAGCTGGCATCCCTTGGCCGCTTGACGGCAAGCATCGCCCACGAG
ATCCGCAACCCGCTCGGCGCAATCAGCCACGCCGCTCAGTTGCTGCAGGAGTCGGAAGTCCTGGACGCGGCGGATCTGCG
GCTAACGCAGATCATTCAGGACCATTCGCGGCGCATGAATCTGGTCATCGAAAACGTGCTGCAGCTGTCACGCCGACGCC
AGGCCGAGCCGCAATTACTGGACCTGAAATACTGGGCGCATCGATTCGCCAGCGAGTTCCGTGAGAACTTGCCGCCACAT
CAGCGCGTGCACGTGGAAACCCGCGGCAGCTCCCTGCAGACCCGCATGGACCCGAACCAGCTGATCCAGGTGCTGACCAA
CCTCGTGCAGAACGGCCTTCGCTACAGCGGCCAGCTGAACGATCAAGCACAGGTGTGGCTACAGCTGTTCCGCGACGAGT
CCAGCGATCTGCCGGTGCTCGAAGTGCTCGACGACGGCCCAGGCGTGCCAACCGACAAACTGCAGAATATTTTCGAGCCT
TTTTTTACGACAGAGAACAAGGGCACGGGGCTGGGCCTCTATATCTCTCGAGAGCTATGCGAAAGCAACCAGGCTCGTCT
GGACTACCGAGAACGAGCCGAGGGCGGCAGTTGCTTCCGTATCGTCTTCGCGCATCCGCGCAAGCTGACCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-244)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

65.66

100

0.657

Multiple sequence alignment