Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GYM49_RS15405 Genome accession   NZ_CP048404
Coordinates   3352288..3352812 (+) Length   174 a.a.
NCBI ID   WP_004249162.1    Uniprot ID   A0A1Z1SRL1
Organism   Proteus mirabilis strain N18-00201     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3347288..3357812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM49_RS15400 (GYM49_15435) uvrA 3349201..3352035 (-) 2835 WP_112843451.1 excinuclease ABC subunit UvrA -
  GYM49_RS15405 (GYM49_15440) ssb 3352288..3352812 (+) 525 WP_004249162.1 single-stranded DNA-binding protein SSB1 Machinery gene
  GYM49_RS17925 - 3352968..3353102 (+) 135 WP_258523355.1 hypothetical protein -
  GYM49_RS17845 - 3353121..3353411 (+) 291 WP_234410680.1 hypothetical protein -
  GYM49_RS15415 (GYM49_15450) - 3353651..3354775 (+) 1125 WP_020946337.1 type IV toxin-antitoxin system AbiEi family antitoxin -
  GYM49_RS17850 (GYM49_15455) - 3354760..3355665 (+) 906 WP_112843452.1 hypothetical protein -
  GYM49_RS15425 (GYM49_15460) zur 3356233..3356763 (+) 531 WP_049197707.1 zinc uptake transcriptional repressor Zur -
  GYM49_RS15430 (GYM49_15465) lexA 3356956..3357567 (-) 612 WP_004245906.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18830.90 Da        Isoelectric Point: 4.9468

>NTDB_id=421068 GYM49_RS15405 WP_004249162.1 3352288..3352812(+) (ssb) [Proteus mirabilis strain N18-00201]
MASRGVNKVILIGNLGQDPEIRYMPSGGAVANLTLATSESWRDKQTGEMKEKTEWHRVVIFGKLAEIAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVNIGGTMQMLGGRGGQDNAPSQGQGGWGQPQQPQASQQFSGGAPSRPAQQPAAAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=421068 GYM49_RS15405 WP_004249162.1 3352288..3352812(+) (ssb) [Proteus mirabilis strain N18-00201]
ATGGCGAGCAGAGGCGTTAACAAAGTTATTCTTATCGGTAATTTAGGGCAGGATCCAGAAATCCGTTATATGCCAAGTGG
TGGTGCAGTGGCAAATCTGACACTAGCAACTTCAGAAAGCTGGCGCGACAAACAAACCGGTGAAATGAAAGAGAAAACCG
AATGGCACCGTGTGGTCATTTTCGGCAAACTAGCAGAAATTGCTGGCGAGTATCTGCGTAAAGGTTCACAAGTTTATATT
GAAGGTCAATTACAAACACGTAAATGGCAAGATCAAAGTGGTCAAGATCGCTACAGCACTGAAGTTGTGGTGAATATCGG
TGGCACAATGCAGATGTTAGGTGGCCGTGGTGGTCAAGATAATGCGCCTTCACAAGGCCAAGGCGGTTGGGGTCAACCTC
AGCAACCACAAGCATCACAACAGTTTAGTGGTGGTGCACCATCTCGCCCAGCACAACAACCCGCAGCGGCACCAGCGCCA
AGTAATGAACCACCAATGGACTTTGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Z1SRL1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

71.892

100

0.764
  ssb Glaesserella parasuis strain SC1401

57.065

100

0.603
  ssb Neisseria meningitidis MC58

48.023

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.023

100

0.489

Multiple sequence alignment