Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CYCMA_RS08665 | Genome accession | NC_015914 |
| Coordinates | 2042893..2043360 (+) | Length | 155 a.a. |
| NCBI ID | WP_014019804.1 | Uniprot ID | G0IVW4 |
| Organism | Cyclobacterium marinum DSM 745 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2037893..2048360
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CYCMA_RS08640 (Cycma_1749) | - | 2037997..2038383 (-) | 387 | WP_014019798.1 | acyl-CoA thioesterase | - |
| CYCMA_RS08645 (Cycma_1750) | - | 2038705..2040276 (-) | 1572 | WP_014019799.1 | Rne/Rng family ribonuclease | - |
| CYCMA_RS08650 (Cycma_1752) | - | 2040454..2041275 (-) | 822 | WP_014019801.1 | tetratricopeptide repeat protein | - |
| CYCMA_RS08655 (Cycma_1753) | - | 2041296..2041604 (-) | 309 | WP_014019802.1 | HU family DNA-binding protein | - |
| CYCMA_RS08660 (Cycma_1754) | mutY | 2041764..2042846 (+) | 1083 | WP_014019803.1 | A/G-specific adenine glycosylase | - |
| CYCMA_RS08665 (Cycma_1755) | ssb | 2042893..2043360 (+) | 468 | WP_014019804.1 | single-stranded DNA-binding protein | Machinery gene |
| CYCMA_RS08670 (Cycma_1756) | gldE | 2043417..2044766 (+) | 1350 | WP_014019805.1 | gliding motility-associated protein GldE | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 16959.52 Da Isoelectric Point: 4.9766
>NTDB_id=42067 CYCMA_RS08665 WP_014019804.1 2042893..2043360(+) (ssb) [Cyclobacterium marinum DSM 745]
MAGVNKVILLGNLGADPEVKHLEGDKVVANLRLATTESYKDRSGNRVENTEWHDLELWDGQARVAEQYLKKGSQIYVEGK
IKSDTWQDDQGNNRKRTKIRVQSFTMLGSRNSGADNAQGGGQSMPAQNSNPNTGMSSNTSPAYDSGDNDADDLPF
MAGVNKVILLGNLGADPEVKHLEGDKVVANLRLATTESYKDRSGNRVENTEWHDLELWDGQARVAEQYLKKGSQIYVEGK
IKSDTWQDDQGNNRKRTKIRVQSFTMLGSRNSGADNAQGGGQSMPAQNSNPNTGMSSNTSPAYDSGDNDADDLPF
Nucleotide
Download Length: 468 bp
>NTDB_id=42067 CYCMA_RS08665 WP_014019804.1 2042893..2043360(+) (ssb) [Cyclobacterium marinum DSM 745]
ATGGCAGGAGTTAATAAAGTAATTTTATTGGGTAATCTTGGTGCAGATCCTGAAGTCAAGCACCTAGAAGGAGATAAGGT
AGTAGCCAACCTTAGACTTGCCACTACTGAATCTTATAAGGACCGTAGCGGCAACCGTGTAGAAAACACGGAATGGCATG
ACTTGGAATTGTGGGACGGTCAGGCAAGAGTAGCCGAACAATACTTAAAAAAAGGCAGTCAAATTTACGTAGAAGGCAAA
ATAAAATCTGATACTTGGCAGGACGATCAAGGCAATAACCGTAAAAGAACCAAGATTAGGGTTCAAAGTTTTACCATGCT
TGGATCAAGAAACAGTGGGGCCGACAATGCTCAAGGCGGCGGCCAATCAATGCCTGCACAAAACAGCAATCCGAACACAG
GAATGAGTAGCAATACTTCACCTGCTTACGATTCCGGAGACAATGACGCCGATGATTTACCATTTTGA
ATGGCAGGAGTTAATAAAGTAATTTTATTGGGTAATCTTGGTGCAGATCCTGAAGTCAAGCACCTAGAAGGAGATAAGGT
AGTAGCCAACCTTAGACTTGCCACTACTGAATCTTATAAGGACCGTAGCGGCAACCGTGTAGAAAACACGGAATGGCATG
ACTTGGAATTGTGGGACGGTCAGGCAAGAGTAGCCGAACAATACTTAAAAAAAGGCAGTCAAATTTACGTAGAAGGCAAA
ATAAAATCTGATACTTGGCAGGACGATCAAGGCAATAACCGTAAAAGAACCAAGATTAGGGTTCAAAGTTTTACCATGCT
TGGATCAAGAAACAGTGGGGCCGACAATGCTCAAGGCGGCGGCCAATCAATGCCTGCACAAAACAGCAATCCGAACACAG
GAATGAGTAGCAATACTTCACCTGCTTACGATTCCGGAGACAATGACGCCGATGATTTACCATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Glaesserella parasuis strain SC1401 |
42.222 |
100 |
0.49 |
| ssb | Vibrio cholerae strain A1552 |
40.462 |
100 |
0.452 |
| ssb | Neisseria meningitidis MC58 |
38.953 |
100 |
0.432 |
| ssb | Neisseria gonorrhoeae MS11 |
38.953 |
100 |
0.432 |