Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M654_RS03435 Genome accession   NZ_CP048273
Coordinates   708281..709015 (+) Length   244 a.a.
NCBI ID   WP_035428518.1    Uniprot ID   A0A6I7EYN0
Organism   Bacillus sp. NSP9.1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703281..714015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS03410 (M654_003405) degS 703570..704727 (+) 1158 WP_026588948.1 histidine kinase Regulator
  M654_RS03415 (M654_003410) degU 704809..705498 (+) 690 WP_026588947.1 two-component system response regulator DegU Regulator
  M654_RS03420 (M654_003415) - 705618..706460 (+) 843 WP_026588946.1 DegV family protein -
  M654_RS03425 (M654_003420) comFA 706595..707983 (+) 1389 WP_026588944.1 DEAD/DEAH box helicase Machinery gene
  M654_RS03430 (M654_003425) - 708040..708324 (+) 285 WP_026588943.1 competence protein ComFB -
  M654_RS03435 (M654_003430) comFC 708281..709015 (+) 735 WP_035428518.1 ComF family protein Machinery gene
  M654_RS03440 (M654_003435) - 709074..709493 (+) 420 WP_026588941.1 TIGR03826 family flagellar region protein -
  M654_RS03445 (M654_003440) flgM 709574..709840 (+) 267 WP_026588940.1 flagellar biosynthesis anti-sigma factor FlgM -
  M654_RS03450 (M654_003445) - 709860..710339 (+) 480 WP_026588939.1 flagellar protein FlgN -
  M654_RS03455 (M654_003450) flgK 710355..711878 (+) 1524 WP_026588938.1 flagellar hook-associated protein FlgK -
  M654_RS03460 (M654_003455) flgL 711889..712800 (+) 912 WP_026588937.1 flagellar hook-associated protein FlgL -
  M654_RS03465 (M654_003460) - 712850..713416 (+) 567 WP_026588936.1 DUF6470 family protein -
  M654_RS03470 (M654_003465) fliW 713437..713868 (+) 432 WP_026588935.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 28245.83 Da        Isoelectric Point: 9.7706

>NTDB_id=420425 M654_RS03435 WP_035428518.1 708281..709015(+) (comFC) [Bacillus sp. NSP9.1]
MKIRIAKINRKEEDELNCLICEAPLSHSLSWRVLFFLRTEEKICRECKESFNKIEGTVCRKCGRPQDSERLCRDCLKWEA
DPKTRSLLKQNRSVYLYNSFMKDALARFKFRGDAELVFAFAPSFIRAFQTYCRHSHPILVPIPLSEERKIERGFNQAELL
ASLLKRPVIHPLIRTENEKQSKKSRAERLKEKNVFQTDKGSVKGLHVMLIDDLYTTGATLHHAARCLKVDGGADLVSSYT
LIRS

Nucleotide


Download         Length: 735 bp        

>NTDB_id=420425 M654_RS03435 WP_035428518.1 708281..709015(+) (comFC) [Bacillus sp. NSP9.1]
ATGAAAATCCGTATTGCGAAAATCAACAGAAAGGAAGAGGATGAGCTGAATTGTTTAATCTGTGAAGCGCCTCTTTCACA
TTCTCTTTCATGGCGTGTCTTGTTCTTTTTGCGAACGGAAGAAAAGATATGTCGGGAATGTAAAGAGAGCTTTAACAAGA
TCGAAGGAACCGTATGCCGCAAATGCGGCAGGCCGCAGGACAGTGAAAGGCTCTGCCGGGATTGTTTAAAATGGGAAGCC
GATCCGAAAACACGCTCACTTCTCAAGCAAAACCGCTCCGTTTATCTGTACAACTCTTTTATGAAAGACGCGCTCGCCCG
CTTTAAGTTCAGAGGCGATGCCGAACTTGTCTTCGCTTTTGCCCCATCATTTATCCGCGCCTTTCAAACATACTGCCGCC
ATTCTCATCCCATACTCGTGCCGATTCCTTTAAGCGAGGAACGCAAAATCGAGAGAGGCTTTAATCAGGCGGAGCTGCTT
GCTTCCTTATTAAAAAGACCCGTCATCCATCCATTGATCAGAACGGAAAATGAAAAACAATCCAAGAAAAGCAGAGCGGA
GCGCCTTAAAGAAAAAAACGTCTTTCAAACGGACAAAGGATCTGTAAAGGGTCTCCATGTCATGCTGATTGACGATTTGT
ATACGACCGGCGCAACTCTCCACCATGCAGCCCGGTGCCTGAAGGTTGACGGCGGAGCCGATTTGGTATCATCTTACACA
TTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7EYN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.913

94.262

0.508

Multiple sequence alignment