Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M654_RS03415 Genome accession   NZ_CP048273
Coordinates   704809..705498 (+) Length   229 a.a.
NCBI ID   WP_026588947.1    Uniprot ID   A0A6I7F309
Organism   Bacillus sp. NSP9.1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 699809..710498
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS03395 (M654_003390) - 700215..701558 (-) 1344 WP_081692877.1 kelch-like protein -
  M654_RS03400 (M654_003395) - 701620..702696 (-) 1077 WP_026588950.1 LCP family protein -
  M654_RS03405 (M654_003400) - 702710..703348 (-) 639 WP_026588949.1 YigZ family protein -
  M654_RS03410 (M654_003405) degS 703570..704727 (+) 1158 WP_026588948.1 histidine kinase Regulator
  M654_RS03415 (M654_003410) degU 704809..705498 (+) 690 WP_026588947.1 two-component system response regulator DegU Regulator
  M654_RS03420 (M654_003415) - 705618..706460 (+) 843 WP_026588946.1 DegV family protein -
  M654_RS03425 (M654_003420) comFA 706595..707983 (+) 1389 WP_026588944.1 DEAD/DEAH box helicase Machinery gene
  M654_RS03430 (M654_003425) - 708040..708324 (+) 285 WP_026588943.1 competence protein ComFB -
  M654_RS03435 (M654_003430) comFC 708281..709015 (+) 735 WP_035428518.1 ComF family protein Machinery gene
  M654_RS03440 (M654_003435) - 709074..709493 (+) 420 WP_026588941.1 TIGR03826 family flagellar region protein -
  M654_RS03445 (M654_003440) flgM 709574..709840 (+) 267 WP_026588940.1 flagellar biosynthesis anti-sigma factor FlgM -
  M654_RS03450 (M654_003445) - 709860..710339 (+) 480 WP_026588939.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25826.51 Da        Isoelectric Point: 5.9436

>NTDB_id=420423 M654_RS03415 WP_026588947.1 704809..705498(+) (degU) [Bacillus sp. NSP9.1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVDLYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHAQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=420423 M654_RS03415 WP_026588947.1 704809..705498(+) (degU) [Bacillus sp. NSP9.1]
GTGACTAAAGTAAATATTGTAATTATTGACGATCATCAGTTATTCCGTGAAGGTGTAAAACGGATTTTGGACTTCGAACC
TACCTTTGAGGTAGTAGCCGAAGGAGACGACGGTGATGAAGCAGCTCGCATTGTCGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAACATGCCGAATGTAAACGGAGTGGAAGCGACAAAACAGCTGGTCGATCTTTACCCGGAATCAAAGGTT
ATTATTTTATCCATTCACGACGATGAAAACTATGTAACACACGCATTAAAAACAGGAGCACGCGGCTATCTTCTGAAAGA
AATGGATGCCGACACACTGATTGAAGCCGTAAAAGTAGTGGCTGAAGGCGGATCTTACCTTCACCCTAAGGTTACGCACA
ATCTTGTCAACGAATTCCGGCGTTTGGCAACAAGCGGGGTATCAGCGCATGCCCAGCATGAAGTGTATCCGGAAATTCGC
AGACCGCTTCACATTTTGACGAGAAGGGAATGCGAGGTTTTACAGATGCTCGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTATTTATCAGCGAAAAGACGGTTAAAAACCATGTCAGCAACATCCTGCAGAAAATGAATGTAAACGACAGAA
CTCAAGCTGTCGTCGTGGCCATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7F309

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.127

100

0.991

Multiple sequence alignment