Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M654_RS00625 Genome accession   NZ_CP048273
Coordinates   109270..109782 (+) Length   170 a.a.
NCBI ID   WP_026589474.1    Uniprot ID   -
Organism   Bacillus sp. NSP9.1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 104270..114782
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M654_RS00595 (M654_000595) - 104440..105288 (+) 849 WP_026589480.1 ParB/RepB/Spo0J family partition protein -
  M654_RS00600 (M654_000600) yyaC 105332..105949 (-) 618 WP_026589479.1 spore protease YyaC -
  M654_RS00605 (M654_000605) - 106200..107216 (+) 1017 WP_026589478.1 membrane protein -
  M654_RS00610 (M654_000610) - 107336..107542 (+) 207 WP_026589477.1 DUF951 domain-containing protein -
  M654_RS00615 (M654_000615) ychF 107723..108823 (+) 1101 WP_026589476.1 redox-regulated ATPase YchF -
  M654_RS00620 (M654_000620) rpsF 108936..109223 (+) 288 WP_026589475.1 30S ribosomal protein S6 -
  M654_RS00625 (M654_000625) ssbA 109270..109782 (+) 513 WP_026589474.1 single-stranded DNA-binding protein SsbA Machinery gene
  M654_RS00630 (M654_000630) rpsR 109828..110067 (+) 240 WP_003178022.1 30S ribosomal protein S18 -
  M654_RS00635 (M654_000635) - 110135..110683 (-) 549 WP_026589473.1 recombinase family protein -
  M654_RS00640 (M654_000640) - 110907..112376 (+) 1470 WP_081692882.1 SulP family inorganic anion transporter -
  M654_RS00645 (M654_000645) - 112394..112813 (+) 420 WP_026589471.1 universal stress protein -
  M654_RS00650 (M654_000650) - 112904..114175 (+) 1272 WP_026589470.1 MFS transporter -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18469.10 Da        Isoelectric Point: 4.7410

>NTDB_id=420415 M654_RS00625 WP_026589474.1 109270..109782(+) (ssbA) [Bacillus sp. NSP9.1]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQQGEREADFINCVVWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVYVTEVQAESVQFLEPKGGGSGSGGYSGGQGGQYFGGGQNEPNPFGGSQNNQNRNQGNSFNDDPFANDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=420415 M654_RS00625 WP_026589474.1 109270..109782(+) (ssbA) [Bacillus sp. NSP9.1]
ATGCTTAACCGAGTTGTTTTAGTCGGCAGACTGACAAAGGACCCAGAGCTTCGTTATACCCCAAGCGGTGCAGCTGTTGC
GACCTTCACGCTCGCTGTGAATCGTACGTTTACGAATCAGCAGGGCGAACGTGAAGCGGATTTTATCAACTGTGTCGTTT
GGAGAAGACAAGCCGAAAACGTAGCGAATTTCCTTAAAAAAGGAAGCCTTGCAGGTGTTGACGGACGTTTGCAAACGAGG
AACTACGAAAACCAGCAGGGACAGCGTGTGTATGTCACAGAAGTTCAAGCTGAAAGTGTTCAATTCCTGGAGCCTAAAGG
CGGCGGTTCTGGTTCCGGCGGTTACAGCGGAGGCCAGGGAGGCCAATACTTTGGCGGCGGACAAAACGAACCGAATCCAT
TCGGAGGCAGTCAGAACAACCAGAATCGCAATCAAGGCAACAGCTTTAATGATGATCCATTTGCCAATGATGGAAAGCCG
ATTGACATCTCAGACGACGACTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

85.465

100

0.865
  ssb Latilactobacillus sakei subsp. sakei 23K

59.538

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.353

0.4
  ssb Glaesserella parasuis strain SC1401

36.872

100

0.388

Multiple sequence alignment