Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicR   Type   Regulator
Locus tag   SPPN_RS10435 Genome accession   NC_015875
Coordinates   2001089..2001796 (+) Length   235 a.a.
NCBI ID   WP_000166475.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   repress comCDE expression; repress comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1996089..2006796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS10420 (SPPN_10545) argR 1998074..1998520 (-) 447 WP_001231476.1 arginine repressor -
  SPPN_RS10425 (SPPN_10550) argS 1998656..2000347 (+) 1692 WP_001092727.1 arginine--tRNA ligase -
  SPPN_RS10430 (SPPN_10555) - 2000529..2001005 (+) 477 WP_044012301.1 cupin domain-containing protein -
  SPPN_RS10435 (SPPN_10560) vicR 2001089..2001796 (+) 708 WP_000166475.1 response regulator transcription factor Regulator
  SPPN_RS10440 (SPPN_10565) pnpS 2001797..2003128 (+) 1332 WP_000683619.1 two-component system histidine kinase PnpS -
  SPPN_RS10445 (SPPN_10570) - 2003295..2004170 (+) 876 WP_000669491.1 substrate-binding domain-containing protein -
  SPPN_RS10450 (SPPN_10575) pstC 2004288..2005151 (+) 864 WP_000165892.1 phosphate ABC transporter permease subunit PstC -
  SPPN_RS10455 (SPPN_10580) pstA 2005144..2005959 (+) 816 WP_000049768.1 phosphate ABC transporter permease PstA -
  SPPN_RS10460 (SPPN_10585) pstB 2005961..2006713 (+) 753 WP_000536446.1 phosphate ABC transporter ATP-binding protein PstB -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 27230.61 Da        Isoelectric Point: 6.6568

>NTDB_id=42038 SPPN_RS10435 WP_000166475.1 2001089..2001796(+) (vicR) [Streptococcus pseudopneumoniae IS7493]
MTKQVLLVDDEEHILKLLDYHLSKEGFSTQLVTNGRKALALAETEPFDFILLDIMLPQLDGMEVCKRLRAKGVKTPIMMV
SAKSDEFDKVLALELGADDYLTKPFSPRELLARVKAVLRRTKGEQEGDDSDNIADDSWLFGTLKVYPERHEVYKANKLLS
LTPKEFELLLYLMKHPNMTLTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQFIRTIRGYGYKFKEL

Nucleotide


Download         Length: 708 bp        

>NTDB_id=42038 SPPN_RS10435 WP_000166475.1 2001089..2001796(+) (vicR) [Streptococcus pseudopneumoniae IS7493]
ATGACAAAACAAGTCTTATTAGTGGATGATGAAGAACACATTCTGAAATTGCTTGACTACCATTTAAGTAAGGAAGGCTT
TTCTACTCAATTGGTAACAAATGGACGGAAGGCCTTAGCTTTGGCAGAAACAGAACCCTTTGATTTTATCTTGCTTGATA
TCATGTTACCACAATTAGATGGCATGGAAGTTTGTAAGCGGCTGAGAGCCAAAGGCGTCAAAACTCCAATTATGATGGTT
TCTGCGAAAAGTGATGAATTTGATAAGGTTTTGGCCTTGGAATTAGGGGCTGATGACTACCTGACCAAGCCTTTTAGCCC
TAGAGAATTGCTGGCGCGTGTCAAGGCTGTCCTCAGGCGAACTAAAGGAGAACAAGAAGGAGATGATTCAGATAATATCG
CTGACGATTCTTGGCTATTTGGGACCTTGAAAGTATACCCTGAGCGTCATGAAGTCTACAAGGCGAATAAGTTACTGAGT
TTGACCCCAAAAGAATTTGAACTCTTGCTCTATCTTATGAAACATCCCAACATGACACTGACTAGAGAGCGTCTTTTGGA
ACGTATCTGGGGGTATGACTTTGGGCAGGAAACACGTTTGGTGGACGTTCATATTGGTAAGTTGAGGGAAAAAATTGAAG
ACAATCCTAAAGCCCCTCAATTTATTCGAACCATTCGGGGTTATGGTTATAAGTTCAAGGAGTTATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(159-232)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicR Streptococcus mutans UA159

48.707

98.723

0.481
  micA Streptococcus pneumoniae Cp1015

47.845

98.723

0.472
  covR Lactococcus lactis subsp. lactis strain DGCC12653

40.773

99.149

0.404
  covR Streptococcus salivarius strain HSISS4

39.744

99.574

0.396

Multiple sequence alignment