Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GYM75_RS04115 Genome accession   NZ_CP048264
Coordinates   940600..941109 (-) Length   169 a.a.
NCBI ID   WP_220216899.1    Uniprot ID   -
Organism   Gilliamella sp. ESL0441     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 935600..946109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM75_RS04090 (GYM75_04090) lpxK 937061..938074 (+) 1014 WP_220216894.1 tetraacyldisaccharide 4'-kinase -
  GYM75_RS04095 (GYM75_04095) - 938071..938256 (+) 186 WP_220216895.1 Trm112 family protein -
  GYM75_RS04100 (GYM75_04100) kdsB 938273..939037 (+) 765 WP_220216896.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GYM75_RS04105 (GYM75_04105) - 939041..939733 (+) 693 WP_220216897.1 DUF2461 domain-containing protein -
  GYM75_RS04110 (GYM75_04110) - 939813..940475 (-) 663 WP_220216898.1 MarC family NAAT transporter -
  GYM75_RS04115 (GYM75_04115) ssb 940600..941109 (-) 510 WP_220216899.1 single-stranded DNA-binding protein Machinery gene
  GYM75_RS04120 (GYM75_04120) corA 941324..942265 (+) 942 WP_220216900.1 magnesium/cobalt transporter CorA -
  GYM75_RS04125 (GYM75_04125) - 942489..943457 (+) 969 WP_220216901.1 glucokinase -
  GYM75_RS04130 (GYM75_04130) - 943470..943718 (+) 249 WP_220216902.1 YcgL domain-containing protein -
  GYM75_RS04135 (GYM75_04135) - 943715..944137 (+) 423 WP_220216903.1 YcgN family cysteine cluster protein -
  GYM75_RS04140 (GYM75_04140) - 944166..944723 (-) 558 WP_220216904.1 YggT family protein -
  GYM75_RS04145 (GYM75_04145) - 944761..945462 (-) 702 WP_220216905.1 YggS family pyridoxal phosphate-dependent enzyme -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18696.64 Da        Isoelectric Point: 4.7884

>NTDB_id=420299 GYM75_RS04115 WP_220216899.1 940600..941109(-) (ssb) [Gilliamella sp. ESL0441]
MASRGINKVILVGNLGQDPEVRYMPNGSAVANFSVATSESWKDKQTGETRDRTEWHRVVVFGKLAEIAGEYIKKGTQVYL
EGQLQTRKWQDQTGNDRYTTEVVINPIGGTLQILGSRNSNENFDDGSQNWGQSANNMSAAPSAPRPVQQNPAQPKSPEPP
MDFDDDIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=420299 GYM75_RS04115 WP_220216899.1 940600..941109(-) (ssb) [Gilliamella sp. ESL0441]
ATGGCAAGCCGTGGAATAAATAAAGTCATATTAGTTGGTAATTTAGGTCAAGATCCAGAAGTTCGTTATATGCCAAATGG
TAGCGCTGTTGCTAATTTCAGTGTTGCAACTTCAGAATCATGGAAAGATAAACAAACTGGTGAAACCCGTGATCGTACAG
AATGGCATCGTGTCGTTGTTTTTGGTAAGTTAGCTGAAATTGCAGGTGAATATATCAAAAAAGGAACTCAAGTATATCTT
GAAGGACAATTACAAACGCGAAAATGGCAAGATCAAACAGGCAATGATCGTTATACGACAGAAGTTGTAATTAATCCTAT
TGGTGGTACGTTACAAATTTTAGGATCTCGTAATAGTAATGAAAACTTTGATGATGGTTCACAAAATTGGGGACAAAGTG
CAAATAATATGTCGGCTGCACCTAGCGCACCTCGTCCAGTTCAACAAAACCCAGCTCAACCAAAATCGCCTGAACCACCT
ATGGATTTCGATGACGATATTCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

57.627

100

0.604
  ssb Glaesserella parasuis strain SC1401

52.432

100

0.574
  ssb Neisseria gonorrhoeae MS11

47.458

100

0.497
  ssb Neisseria meningitidis MC58

46.893

100

0.491

Multiple sequence alignment