Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GYM76_RS06105 Genome accession   NZ_CP048263
Coordinates   1338864..1339385 (+) Length   173 a.a.
NCBI ID   WP_220224899.1    Uniprot ID   -
Organism   Gilliamella sp. ESL0443     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1333864..1344385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GYM76_RS06075 (GYM76_06085) - 1334556..1335257 (+) 702 WP_220224897.1 YggS family pyridoxal phosphate-dependent enzyme -
  GYM76_RS06080 (GYM76_06090) - 1335294..1335851 (+) 558 WP_220224898.1 YggT family protein -
  GYM76_RS06085 (GYM76_06095) - 1335879..1336301 (-) 423 WP_065561932.1 YcgN family cysteine cluster protein -
  GYM76_RS06090 (GYM76_06100) - 1336298..1336546 (-) 249 WP_081299438.1 YcgL domain-containing protein -
  GYM76_RS06095 (GYM76_06105) - 1336569..1337528 (-) 960 WP_065734559.1 glucokinase -
  GYM76_RS06100 (GYM76_06110) corA 1337716..1338657 (-) 942 WP_065734620.1 magnesium/cobalt transporter CorA -
  GYM76_RS06105 (GYM76_06115) ssb 1338864..1339385 (+) 522 WP_220224899.1 single-stranded DNA-binding protein Machinery gene
  GYM76_RS11115 - 1339445..1339759 (+) 315 Protein_1193 MarC family protein -
  GYM76_RS06120 (GYM76_06130) - 1339784..1340473 (-) 690 WP_370632540.1 DUF2461 domain-containing protein -
  GYM76_RS06125 (GYM76_06135) kdsB 1340474..1341238 (-) 765 WP_065734564.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GYM76_RS06130 (GYM76_06140) - 1341259..1341438 (-) 180 WP_220224904.1 Trm112 family protein -
  GYM76_RS06135 (GYM76_06145) lpxK 1341435..1342448 (-) 1014 WP_370632618.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18974.04 Da        Isoelectric Point: 4.9752

>NTDB_id=420277 GYM76_RS06105 WP_220224899.1 1338864..1339385(+) (ssb) [Gilliamella sp. ESL0443]
MATRGINKVILVGNLGQDPEVRVMSTGNTVANFNVATSETWKDKQTGENREKTEWHRIVVFGKLAEITGEYIKKGTLVYI
EGQLQTRKWQDQSGQDRYTTEVVINPIGGVLQILGNRPNNDSYNEGSKSWGQSANNTSSVPTTPAASRASSTAPASQPSM
PEPPMDFDDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=420277 GYM76_RS06105 WP_220224899.1 1338864..1339385(+) (ssb) [Gilliamella sp. ESL0443]
ATGGCAACCCGAGGAATTAATAAAGTCATTTTAGTTGGTAATTTAGGTCAAGATCCAGAAGTACGTGTCATGTCAACTGG
TAATACTGTCGCAAATTTTAATGTTGCTACATCAGAAACTTGGAAAGACAAGCAAACTGGCGAGAATCGAGAAAAAACAG
AATGGCATCGAATTGTCGTATTTGGTAAATTAGCTGAAATTACTGGTGAATACATTAAAAAAGGAACACTCGTTTATATT
GAGGGGCAACTACAAACTCGTAAATGGCAAGACCAATCAGGTCAAGATCGTTACACTACAGAAGTTGTTATCAACCCTAT
TGGTGGCGTATTGCAAATTTTAGGTAACCGCCCTAATAATGACTCTTATAATGAAGGTTCAAAAAGTTGGGGACAAAGTG
CAAATAATACATCCTCTGTGCCAACTACTCCTGCAGCATCTCGTGCTTCATCAACTGCACCAGCAAGTCAACCATCTATG
CCTGAACCACCAATGGATTTCGATGACGATATTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.378

100

0.624
  ssb Glaesserella parasuis strain SC1401

49.468

100

0.538
  ssb Neisseria gonorrhoeae MS11

43.931

100

0.439
  ssb Neisseria meningitidis MC58

43.353

100

0.434

Multiple sequence alignment