Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   I02_RS24155 Genome accession   NC_017651
Coordinates   4920231..4920707 (+) Length   158 a.a.
NCBI ID   WP_001186708.1    Uniprot ID   -
Organism   Escherichia coli str. 'clone D i2'     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4915231..4925707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I02_RS24130 (i02_4885c) - 4916508..4917413 (+) 906 WP_000203561.1 diguanylate cyclase regulator RdcB family protein -
  I02_RS24135 (i02_4885d) - 4917410..4918480 (+) 1071 WP_000102675.1 patatin-like phospholipase family protein -
  I02_RS24145 (i02_4886) - 4918820..4919638 (+) 819 WP_001234592.1 DUF932 domain-containing protein -
  I02_RS24150 (i02_4887) - 4919730..4920215 (+) 486 WP_000206672.1 antirestriction protein -
  I02_RS24155 (i02_4888) radC 4920231..4920707 (+) 477 WP_001186708.1 RadC family protein Machinery gene
  I02_RS24160 - 4920776..4920997 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  I02_RS24165 (i02_4889) - 4921076..4921438 (+) 363 WP_024186744.1 type IV toxin-antitoxin system YeeU family antitoxin -
  I02_RS24170 (i02_4890) - 4921528..4921902 (+) 375 WP_000854683.1 TA system toxin CbtA family protein -
  I02_RS24175 - 4921899..4922390 (+) 492 WP_000976831.1 DUF5983 family protein -
  I02_RS24180 - 4922402..4922599 (+) 198 WP_000839235.1 DUF957 domain-containing protein -
  I02_RS28300 - 4922684..4922833 (+) 150 Protein_4613 hypothetical protein -
  I02_RS24185 (i02_4891) - 4923300..4924564 (+) 1265 Protein_4614 integrase arm-type DNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17631.28 Da        Isoelectric Point: 7.6151

>NTDB_id=42015 I02_RS24155 WP_001186708.1 4920231..4920707(+) (radC) [Escherichia coli str. 'clone D i2']
MQQLSFLPGAMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIIGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=42015 I02_RS24155 WP_001186708.1 4920231..4920707(+) (radC) [Escherichia coli str. 'clone D i2']
ATGCAGCAGCTTTCCTTTCTGCCCGGAGCGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGTCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCAGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTACCTGAACAACCAGAATCAGTTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAGGTCCATCCCCGGGAAGTGATTAAACGTGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCAGGTGAAGTCACACCCAGTAAGGCTGACCGCCTTATTACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAATCGGTGGCAGCCAGGTTTTCTCCTTTGCTGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment