Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SPPN_RS08765 Genome accession   NC_015875
Coordinates   1706774..1707505 (-) Length   243 a.a.
NCBI ID   WP_000889950.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1701774..1712505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS08730 (SPPN_08875) blpC 1702070..1702225 (+) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  SPPN_RS08735 (SPPN_08880) - 1702270..1703610 (-) 1341 WP_001028650.1 sensor histidine kinase -
  SPPN_RS08740 (SPPN_08885) comE/blpR 1703624..1704361 (-) 738 WP_001219128.1 response regulator transcription factor Regulator
  SPPN_RS08745 (SPPN_08890) - 1704366..1704704 (-) 339 WP_000682127.1 LytTR family DNA-binding domain-containing protein -
  SPPN_RS08750 (SPPN_08900) - 1705063..1705314 (+) 252 WP_001130045.1 hypothetical protein -
  SPPN_RS08755 (SPPN_08905) - 1705343..1705666 (+) 324 WP_000131861.1 hypothetical protein -
  SPPN_RS08760 (SPPN_08910) - 1705728..1706777 (-) 1050 WP_000653756.1 ABC transporter permease -
  SPPN_RS08765 (SPPN_08915) pptA 1706774..1707505 (-) 732 WP_000889950.1 ABC transporter ATP-binding protein Regulator
  SPPN_RS08770 (SPPN_08920) - 1707573..1707983 (+) 411 WP_001278321.1 HIT family protein -
  SPPN_RS08775 (SPPN_08925) - 1707993..1708280 (+) 288 WP_000777749.1 hypothetical protein -
  SPPN_RS08780 (SPPN_08930) dnaJ 1708978..1710117 (-) 1140 WP_014017330.1 molecular chaperone DnaJ -
  SPPN_RS08785 (SPPN_08935) - 1710396..1710797 (-) 402 WP_000114360.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27084.51 Da        Isoelectric Point: 4.6122

>NTDB_id=42016 SPPN_RS08765 WP_000889950.1 1706774..1707505(-) (pptA) [Streptococcus pseudopneumoniae IS7493]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLTPYSGSININGLTLQEDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQDLAFDRVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAIADLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFNMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=42016 SPPN_RS08765 WP_000889950.1 1706774..1707505(-) (pptA) [Streptococcus pseudopneumoniae IS7493]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTTTTGAAAGATGTGTCTTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGAAAATCGACGACCATCAATGAAATTATCGGTCTGTTGACACCTT
ATAGTGGCTCCATCAATATCAATGGGCTGACCCTGCAAGAAGATGCGACAAGTTACCGCAAGCAAATTGGCTACATTCCT
GAGACACCTAGCTTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCCATGGCTTATGGTATTGAGCAAGA
TCTTGCTTTTGATCGAGTAGAACCTTTGTTAAAAATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGACCCGTTGGCTATTGCGGACTTGATTCAGCTTTTGGAAGTGGAAAAGCAAAAAGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCAGCGGAAAAGATGTGTGATGCTTTTGTCATTCTTCACAAAGGGGAAGTGCGTGCTAAGG
GAAATCTCCTGCAACTGCGCGAAGCCTTTAACATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment