Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   HYC88_RS07640 Genome accession   NZ_CP061072
Coordinates   1841700..1843322 (-) Length   540 a.a.
NCBI ID   WP_073802864.1    Uniprot ID   -
Organism   Streptomyces sp. CB00271     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1836700..1848322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYC88_RS07620 (HYC88_07620) - 1837834..1838607 (+) 774 WP_073802865.1 murein hydrolase activator EnvC -
  HYC88_RS07625 (HYC88_07625) - 1838558..1839115 (-) 558 WP_007452486.1 TetR/AcrR family transcriptional regulator -
  HYC88_RS07630 (HYC88_07630) whiG 1839221..1840057 (-) 837 WP_050358585.1 RNA polymerase sigma factor WhiG -
  HYC88_RS07635 (HYC88_07635) dprA 1840312..1841424 (-) 1113 WP_073802992.1 DNA-processing protein DprA -
  HYC88_RS07640 (HYC88_07640) comM 1841700..1843322 (-) 1623 WP_073802864.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  HYC88_RS07645 (HYC88_07645) - 1843322..1843681 (-) 360 WP_050358587.1 YraN family protein -
  HYC88_RS07650 (HYC88_07650) - 1843840..1844148 (-) 309 WP_003965949.1 DUF2469 domain-containing protein -
  HYC88_RS07655 (HYC88_07655) - 1844213..1844701 (-) 489 WP_032792508.1 NUDIX hydrolase -
  HYC88_RS07660 (HYC88_07660) lepB 1844698..1845453 (-) 756 WP_073802863.1 signal peptidase I -
  HYC88_RS07665 (HYC88_07665) lepB 1845504..1846406 (-) 903 WP_073802862.1 signal peptidase I -
  HYC88_RS07670 (HYC88_07670) lepB 1846309..1847385 (-) 1077 WP_073802991.1 signal peptidase I -
  HYC88_RS07675 (HYC88_07675) lepB 1847378..1848148 (-) 771 WP_073802861.1 signal peptidase I -

Sequence

Protein


Download         Length: 540 a.a.        Molecular weight: 55807.27 Da        Isoelectric Point: 6.6577

>NTDB_id=419872 HYC88_RS07640 WP_073802864.1 1841700..1843322(-) (comM) [Streptomyces sp. CB00271]
MGFARACSVALVGVEGVVVEVQADLEPGVAAFTLVGLPDKSLVESRDRVRAAVVNSGAEWPQKKLTVGLSPASVPKSGSG
FDLAVACAVLGAAERIDPAMIADVVMIGELGLDGRVRPVRGVLPAVLAAAEAGYEQVVVPEQTAGEAALVPGVSVLGVRS
LRQLIAVLCDEPVPEEPVEGQGRPDTMLAGLMIPGTGLGTGLAPAAARGDRSLPDLADVAGQPRPRQALEVAAAGGHHLL
FSGPPGAGKTMLAERLSSVLPPLTRQESLEVTAVHSVAGILPPGEPLVSRAPYCAPHHSATMQSLVGGGNGMPRPGAVSL
AHRGVLFLDEAPEFSGKALDALRQPLESGHVVVARSAGVVRLPARFLMVLAANPCPCGRHSLTGAGCECPPSVVRRYQAR
LSGPLLDRVDLRVEVEPVDRADLLGHGGRGESTAVVAARVREARARAAERLVGTPWTTNSEVPGHELRTRLLVAPGALAA
AERDLERGILTARGLDRVLRVAWTVADLRGADRPDASDVAVALELRTGIQRGVPMGVGER

Nucleotide


Download         Length: 1623 bp        

>NTDB_id=419872 HYC88_RS07640 WP_073802864.1 1841700..1843322(-) (comM) [Streptomyces sp. CB00271]
ATGGGTTTCGCGCGAGCGTGTTCCGTGGCGCTGGTGGGCGTCGAGGGCGTGGTGGTGGAGGTCCAGGCGGACCTGGAGCC
GGGGGTGGCGGCCTTCACCCTGGTCGGGCTGCCGGACAAGAGCCTGGTCGAGAGCCGGGACCGGGTGCGGGCCGCCGTGG
TCAACTCCGGTGCCGAGTGGCCGCAGAAGAAGCTCACGGTCGGCCTCTCCCCGGCCTCCGTGCCGAAGAGCGGTTCGGGC
TTCGACCTCGCCGTCGCGTGTGCGGTCCTCGGCGCGGCGGAGCGGATCGACCCCGCCATGATCGCCGACGTGGTGATGAT
CGGCGAGCTGGGTCTGGACGGCCGGGTCCGTCCGGTACGGGGTGTGCTGCCCGCCGTCCTCGCCGCGGCCGAAGCGGGGT
ACGAACAGGTCGTCGTCCCCGAGCAGACGGCCGGGGAGGCGGCTCTGGTGCCGGGGGTCTCGGTCCTCGGGGTCCGGAGC
CTGCGCCAGCTCATCGCCGTGCTCTGCGACGAACCGGTGCCCGAGGAACCGGTCGAGGGCCAGGGGCGGCCCGACACCAT
GCTGGCCGGGCTGATGATCCCCGGCACGGGCCTCGGCACGGGGCTCGCCCCGGCCGCCGCGCGGGGCGACCGGAGCCTGC
CGGACCTGGCGGACGTCGCGGGGCAGCCCCGCCCGCGCCAGGCCCTGGAGGTGGCCGCGGCCGGGGGGCACCATCTGCTG
TTCTCGGGCCCGCCGGGCGCGGGCAAGACCATGCTGGCCGAGCGGCTGTCGTCGGTCCTGCCGCCGTTGACCCGGCAGGA
ATCCCTCGAAGTGACGGCGGTCCACTCCGTGGCGGGCATCCTCCCCCCGGGTGAACCGCTCGTCTCCCGGGCGCCCTACT
GCGCCCCGCACCACTCGGCGACCATGCAGTCCCTGGTCGGCGGGGGCAACGGGATGCCGAGGCCCGGGGCGGTCTCCCTC
GCCCACCGGGGGGTGCTCTTCCTGGACGAGGCCCCCGAATTCTCGGGCAAGGCCCTCGACGCGCTGCGGCAGCCGCTGGA
GTCGGGTCATGTGGTGGTCGCGCGGTCCGCGGGGGTGGTGCGGCTGCCGGCCCGCTTCCTGATGGTGCTGGCCGCCAATC
CGTGTCCCTGCGGCCGGCACAGCCTCACCGGCGCGGGTTGCGAGTGCCCGCCCTCGGTCGTCCGCCGCTATCAGGCGCGC
CTGTCCGGGCCCCTCCTCGACCGGGTCGACCTGCGGGTCGAGGTGGAGCCGGTCGACCGCGCCGACCTCCTGGGGCACGG
CGGCCGCGGCGAGTCGACGGCCGTCGTCGCCGCACGGGTGCGGGAGGCCAGGGCCCGGGCCGCCGAGCGGCTGGTCGGCA
CCCCGTGGACCACGAACAGCGAGGTGCCGGGCCACGAGCTGCGGACCCGGCTGCTCGTGGCTCCGGGGGCGCTGGCCGCC
GCGGAACGGGACCTGGAGCGCGGGATCCTCACGGCCCGGGGGCTGGACCGGGTGCTGAGGGTGGCGTGGACCGTGGCGGA
TCTGCGGGGCGCCGACCGCCCGGACGCCTCCGACGTGGCGGTCGCCCTGGAGCTGCGGACCGGAATCCAGCGCGGGGTGC
CGATGGGGGTGGGGGAGCGGTGA

Domains

Predicted by InterProScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(430-526)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(215-421)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

39.924

97.407

0.389
  comM Acinetobacter baylyi ADP1

39.057

98.148

0.383
  comM Vibrio cholerae O1 biovar El Tor strain E7946

40.392

94.444

0.381
  comM Vibrio cholerae strain A1552

40.392

94.444

0.381
  comM Glaesserella parasuis strain SC1401

37.925

98.148

0.372
  comM Haemophilus influenzae Rd KW20

38.213

97.407

0.372