Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SPPN_RS02470 Genome accession   NC_015875
Coordinates   436508..438004 (+) Length   498 a.a.
NCBI ID   WP_000759897.1    Uniprot ID   A0A3A4S131
Organism   Streptococcus pseudopneumoniae IS7493     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 431508..443004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS02450 pcpA 431860..433215 (+) 1356 Protein_493 choline-binding protein PcpA -
  SPPN_RS02455 (SPPN_02490) - 433216..433979 (-) 764 Protein_494 ISNCY family transposase -
  SPPN_RS12650 (SPPN_02495) - 433986..434177 (+) 192 Protein_495 transposase -
  SPPN_RS13750 - 434152..434334 (-) 183 WP_078800210.1 hypothetical protein -
  SPPN_RS02465 (SPPN_02500) amiA3 434462..436441 (+) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator
  SPPN_RS02470 (SPPN_02505) amiC 436508..438004 (+) 1497 WP_000759897.1 ABC transporter permease Regulator
  SPPN_RS02475 (SPPN_02510) amiD 438004..438930 (+) 927 WP_000103690.1 oligopeptide ABC transporter permease OppC Regulator
  SPPN_RS02480 (SPPN_02515) amiE 438939..440006 (+) 1068 WP_000159548.1 ABC transporter ATP-binding protein Regulator
  SPPN_RS02485 (SPPN_02520) amiF 440017..440943 (+) 927 WP_001291300.1 ATP-binding cassette domain-containing protein Regulator
  SPPN_RS02490 (SPPN_02525) - 441501..442478 (+) 978 WP_000869842.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55631.10 Da        Isoelectric Point: 9.4436

>NTDB_id=41983 SPPN_RS02470 WP_000759897.1 436508..438004(+) (amiC) [Streptococcus pseudopneumoniae IS7493]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYASREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNINLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAITGLIGLVISYAIAVPLGSAMARFKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=41983 SPPN_RS02470 WP_000759897.1 436508..438004(+) (amiC) [Streptococcus pseudopneumoniae IS7493]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAAGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACCTTGGGAGAATTTACTGAAAGTGGTCAATTCTATGCTAGTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATCCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTTGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGAACTAAACATAAATATCTCTTGTACTTTAACAG
TCAGTTCCCATTTGTGCATCAAAATTTTGTGAACATCAATTTAGGTGACTCTTATCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTACTGGTTTGATTGGTTTGGTGATTT
CTTATGCGATTGCAGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCTTCTCAACAGGGGCT
TTGACCTTCTTGCTTGCTCTTCCAACCATTGCCTTGGTTTACATCGTTCGATTGATTGGATCATCTATTGGTCTTCCAGA
TTCGTTCCCTATCTTGGGAGCTGGAGATTGGCGTTCTTACGTTTTACCAGCAGTCATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCTATTTGGATTCGTCGTTACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCATTAT
TGGAGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACGTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A4S131

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

76.908

100

0.769
  amiC Streptococcus thermophilus LMG 18311

76.707

100

0.767
  amiC Streptococcus thermophilus LMD-9

76.305

100

0.763

Multiple sequence alignment