Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SPPN_RS02475 Genome accession   NC_015875
Coordinates   438004..438930 (+) Length   308 a.a.
NCBI ID   WP_000103690.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 433004..443930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS02455 (SPPN_02490) - 433216..433979 (-) 764 Protein_494 ISNCY family transposase -
  SPPN_RS12650 (SPPN_02495) - 433986..434177 (+) 192 Protein_495 transposase -
  SPPN_RS13750 - 434152..434334 (-) 183 WP_078800210.1 hypothetical protein -
  SPPN_RS02465 (SPPN_02500) amiA3 434462..436441 (+) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator
  SPPN_RS02470 (SPPN_02505) amiC 436508..438004 (+) 1497 WP_000759897.1 ABC transporter permease Regulator
  SPPN_RS02475 (SPPN_02510) amiD 438004..438930 (+) 927 WP_000103690.1 oligopeptide ABC transporter permease OppC Regulator
  SPPN_RS02480 (SPPN_02515) amiE 438939..440006 (+) 1068 WP_000159548.1 ABC transporter ATP-binding protein Regulator
  SPPN_RS02485 (SPPN_02520) amiF 440017..440943 (+) 927 WP_001291300.1 ATP-binding cassette domain-containing protein Regulator
  SPPN_RS02490 (SPPN_02525) - 441501..442478 (+) 978 WP_000869842.1 ABC transporter substrate-binding protein -
  SPPN_RS02495 (SPPN_02530) - 442490..443383 (+) 894 WP_001012081.1 ABC transporter permease -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34656.74 Da        Isoelectric Point: 9.8044

>NTDB_id=41984 SPPN_RS02475 WP_000103690.1 438004..438930(+) (amiD) [Streptococcus pseudopneumoniae IS7493]
MSTIDKEKFQFIKRDDFASETIDAPAYSYWKSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=41984 SPPN_RS02475 WP_000103690.1 438004..438930(+) (amiD) [Streptococcus pseudopneumoniae IS7493]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTATAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCACTCTTTGACGGTGTCTGGTTTGGAGC
TCGTAACTCTATCCTTATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTA
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCTATGAGTGTGACGACATGGATTGGGATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGTTATCGTGATTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAACATTATGCCACAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTGCCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTTTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.818

100

0.818
  amiD Streptococcus thermophilus LMD-9

81.818

100

0.818

Multiple sequence alignment