Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SPPN_RS02485 Genome accession   NC_015875
Coordinates   440017..440943 (+) Length   308 a.a.
NCBI ID   WP_001291300.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 435017..445943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS02470 (SPPN_02505) amiC 436508..438004 (+) 1497 WP_000759897.1 ABC transporter permease Regulator
  SPPN_RS02475 (SPPN_02510) amiD 438004..438930 (+) 927 WP_000103690.1 oligopeptide ABC transporter permease OppC Regulator
  SPPN_RS02480 (SPPN_02515) amiE 438939..440006 (+) 1068 WP_000159548.1 ABC transporter ATP-binding protein Regulator
  SPPN_RS02485 (SPPN_02520) amiF 440017..440943 (+) 927 WP_001291300.1 ATP-binding cassette domain-containing protein Regulator
  SPPN_RS02490 (SPPN_02525) - 441501..442478 (+) 978 WP_000869842.1 ABC transporter substrate-binding protein -
  SPPN_RS02495 (SPPN_02530) - 442490..443383 (+) 894 WP_001012081.1 ABC transporter permease -
  SPPN_RS02500 (SPPN_02535) - 443396..444199 (+) 804 WP_000254087.1 ABC transporter ATP-binding protein -
  SPPN_RS02505 (SPPN_02540) treR 444232..444942 (-) 711 WP_000760671.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34734.74 Da        Isoelectric Point: 6.3159

>NTDB_id=41986 SPPN_RS02485 WP_001291300.1 440017..440943(+) (amiF) [Streptococcus pseudopneumoniae IS7493]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEAEREEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQKGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=41986 SPPN_RS02485 WP_001291300.1 440017..440943(+) (amiF) [Streptococcus pseudopneumoniae IS7493]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACGTTCTCGCTTGTTGGTGAGTCAGGTAGTGGGAAAACAACTATTGGTCGTG
CTATCATCGGTCTCAATGATACAAGTAATGGAGATATCATTTTTGAGGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGTATCCAGATGATTTTCCAAGACCCTGCGGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCACCATTTGTTTAAGGATGAAGCAGAGCGTGAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTGGGTCTGCTTGCTGAGCATTTGACTCGTTACCCTCATGAGTTTTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAACCAATTTCAGCCTTGGACGTTTCTGTGCGTGC
CCAAGTCTTGAACTTGCTCAAAAAATTCCAAAAAGAACTTGGCTTGACCTATCTCTTTATCGCCCATGACTTGTCGGTTG
TTCGTTTTATTTCAGATCGTATCGCAGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAGACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATTCCAGATCCAATCTTGGAACGTAAGAAGGTCTT
GAAGGTTTACGACCCAAGTCAACACGACTATGAGACTGATAAACCATCCATGGTTGAAATCCGTCCAGGTCACTATGTTT
GGGCGAACCAAGCCGAATTGGCACGTTATCAAAAAGGACTAAACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

84.918

99.026

0.841
  amiF Streptococcus salivarius strain HSISS4

84.918

99.026

0.841
  amiF Streptococcus thermophilus LMD-9

84.59

99.026

0.838

Multiple sequence alignment