Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SPPN_RS02505 Genome accession   NC_015875
Coordinates   444232..444942 (-) Length   236 a.a.
NCBI ID   WP_000760671.1    Uniprot ID   -
Organism   Streptococcus pseudopneumoniae IS7493     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 439232..449942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPPN_RS02485 (SPPN_02520) amiF 440017..440943 (+) 927 WP_001291300.1 ATP-binding cassette domain-containing protein Regulator
  SPPN_RS02490 (SPPN_02525) - 441501..442478 (+) 978 WP_000869842.1 ABC transporter substrate-binding protein -
  SPPN_RS02495 (SPPN_02530) - 442490..443383 (+) 894 WP_001012081.1 ABC transporter permease -
  SPPN_RS02500 (SPPN_02535) - 443396..444199 (+) 804 WP_000254087.1 ABC transporter ATP-binding protein -
  SPPN_RS02505 (SPPN_02540) treR 444232..444942 (-) 711 WP_000760671.1 trehalose operon repressor Regulator
  SPPN_RS02510 (SPPN_02545) treP 445126..447093 (+) 1968 WP_000514338.1 PTS system trehalose-specific EIIBC component -
  SPPN_RS02515 (SPPN_02550) treC 447271..448896 (+) 1626 WP_000171232.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27674.78 Da        Isoelectric Point: 6.8900

>NTDB_id=41987 SPPN_RS02505 WP_000760671.1 444232..444942(-) (treR) [Streptococcus pseudopneumoniae IS7493]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNITRQIAEQSIY
SYIEDDLKLLIDYAQKEITIDHSNDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFHFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=41987 SPPN_RS02505 WP_000760671.1 444232..444942(-) (treR) [Streptococcus pseudopneumoniae IS7493]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACGGACTATCTGGATATGGAACTAATCCCAAATATCACTCGCCAAATTGCTGAGCAGTCCATCTAT
TCTTATATAGAGGACGACCTCAAACTCCTTATTGATTATGCTCAAAAGGAAATAACCATTGACCACTCAAATGACAGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAATTAGAAAAATTTCACTTTGTAGATTTTGCAAAGCGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

58.051

100

0.581

Multiple sequence alignment